RNA id: XM_036959122.1


Basic Information

Item Value
RNA id XM_036959122.1
length 2542
RNA type mRNA
GC content 0.50
exon number 14
gene id pde1a
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 31458011 ~ 31535521 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caGTGAGAGGGGCAGGACCAGGAACTAGGGGGACTAGCAGGGACCAGGCAGGACTAGTCGTCTCAGTCTCAGAGCAGCACAGTGCAACGCAAGGAGAGGAGCAGCTGGAGACAGCCCAGCCTCATACAGAGCTCCCTGCTCCTATCCCCAACCCAGTCTGGACTCACACTTTAAATGGAAGAGTATGTCACgatcaagaggaagcttctccaCAGACCCGTCTTCAGATTGAGATGCCTGGTGAAGCAGCTGGACAAGGGAGAGGTGAACGTGGTGGACCTGAGGAAGAATATAGAGTATGCAGCCTCTGTTCTAGAGGCAGTCTATATTGATGAAACCAGGCGTCTTCTGGACACTGAGGATGAGCTCAGTGACATCCAGGCGGACTCTGTGCCCATGGAGGTGCGTGATTGGCTGGCCTCAACCTTCACCAGGAAGATGGGCGTGGTCAGGAGACGACCCGAGGAGAAACCACGGTTCAGGAGCATCGTCCATGCCGTGCAGGCTGGCATCTTCGTCGAGagGATGTACAGACGGACGTCTAACATGGCTGGGCTGACGTACCCTCCAGCTGCCATCGCTGTTTTGAAGGATGTAGATAAATGGGCCTTTGATGTGTTTGCCCTCCACGAGGCCAGCAGTGAACACGCATTGAAGTTCCTGGTGTACGAACTGCTCACCCGCTATGATCTGATCAACCGCTTCAGGATTCCAGTTTCATCTCTGGTGACCTTCGTAGAGGCTCTAGAGGTGGGCTACAGCAAACACAGAAACCCCTACCACAACCTCATCCACGCTGCTGACGTCACACAGACAGCACACTATCTGATGCTCCACACTGGCATTATGCACTGGCTCACTGAACTGGACATTCTAGCCATGGTGTTTGCTGCAGCTATCCATGACTTTGAACACACTGGGACAACCAACAACTTTCACATTCAGACCAGgtCAGAGGTGGCCATCCTGTACAATGACCGGTCAGTCCTGGAGAACCACCATGTCAGTGCTGCCTATAGACTTATGCAAGAAGATGAGATGAACATACTGGTCAACCTGTCAAAAGATGACTGGCGagaacTGCGGACTCTGGTGATTGAGATGGTGATGAGTACAGACATGTCCTGCCATTTCCAGCAGATCAAAACCATGAGGAACGCCCTGCAGCAGCCCGAGGGAGTAGACAAGGCTAAAGCCCTATCTCTGATGCTGCATGCAGCTGACATCAGCCACCCAGCCAAGGCCTGGAAGCTGCACTACCGATGGACACAGGCCCTGATGGAGGAGTTCTTCAGACAGGGCGATAAGGAGGTTGAGTTAGGGCTGCCATTCTCCCCTCTGTGTGATCGTAAAGCTACCATGATTGCCCAGTCACAAATAGggtTCATTGACTTCATAGTAGAACCCACattctctgtgttggtggacACGACAGAGAAGATCATTACACCTCTCATAGAGGATACCTTAAAGTCACACGACACTGGTGTCCGCAGGTCAAGTTTGACAGGTAGTGGGTCAGTGACGGTGGTGGAGTCAGTCCAGAGACACAGTGGTCGAGGGTCCAGCCAGGGGGTTGACCAGGGGCTCACTACAGACTATAGCCTGGCTGGCATTGACCTGAAACGGGTCAGACACACACTGGCAGAGGTCAtccaacacaacaaagacagatggaaggagctctctgtacaagAGTTGGCGAGGAAAGAGCAAGCTGAGTTGACTTCTGACCCAGAGGAGGAGTCCCTGATGAACACAGAGGTTACGTTGACTCACACCAGCCCTGAGAGACACAGCCAGGAGCTTCAATCAGAGCCCTTCATTGAACTgatgaacaacacaaacacaaactccAATAACTCTTCCCAGGAGGACTCAGAGCTGGACCACAGTCCTCACAGGCCTCTGTCACCGTCTGAGGATAAAGAGACAACATCACATGGTTCCATCTCTCCTGAACACCTACCATGGAACGGTAGGAATGCTAGCTAGCGATATGATATGATACGATATACGATATGATATACGATACAATATACGATAGAATGTACAATACAACAATGCAACATAATGTAGTGCAACGTAACATAACGCAACACAACAACATGCAATGCAATACAACACAGCACAATAGCACAGTGAAACCAACAGTCATGCCTTTTAACAATGCTGTTGCCCTGTCAGTAAGCTATAGCTATGTGGTATTTTTCTTGTTTCTATAATTGTGTTGTCAGTTACAGCCATCTGTGACCAAGTGTCGAAGAAATAGATAGCTGCCGAGTGGAGGGTTGTCAAGGTTACAGCTGAGTGACGCTGTGTTGTCATGGTAACTGGTGTTGCTTGCAGGAGAAGGCCCTGAGCCAGTCCTTGAGCATGGGGAGGAGTCTCTTCAGAGCCCTTGATTTTGATAGGCTACCCAACAACACTGCCACTTCCTGATTCAACAGGCattatatttgtttgtttttttattgtaaattTGTTCTGAttcattttattgttatttattaaAGATAGGGGTCTTCATGCTCCAAGTGGT

Function

GO: NA

KEGG:

id description
K13755 PDE1; calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2058337 lncRNA upstream 75481 31378219 ~ 31415967 (+) True G1798661
TU2058288 lncRNA upstream 176420 31313092 ~ 31315028 (+) True G1798615
TU2058276 lncRNA upstream 192215 31298367 ~ 31299233 (+) True G1798604
TU2058271 lncRNA upstream 200241 31289995 ~ 31291207 (+) True G1798600
TU2058266 lncRNA upstream 201782 31284091 ~ 31289666 (+) True G1798596
TU2059396 lncRNA downstream 36728 31572249 ~ 31572454 (+) True G1799624
TU2059402 lncRNA downstream 47501 31583022 ~ 31583533 (+) False G1799630
TU2059403 lncRNA downstream 47707 31583228 ~ 31583964 (+) True G1799630
TU2059477 lncRNA downstream 107222 31642743 ~ 31643059 (+) True G1799693
TU2059510 lncRNA downstream 164832 31700353 ~ 31700765 (+) True G1799723
XM_036959603.1 mRNA upstream 124637 31364542 ~ 31366811 (+) True LOC110501756
XM_021579518.2 mRNA upstream 224319 31249607 ~ 31267129 (+) False dnajc10
XM_021579520.2 mRNA upstream 224319 31249622 ~ 31267129 (+) False dnajc10
XM_021579519.2 mRNA upstream 224319 31249639 ~ 31267129 (+) True dnajc10
XM_036959111.1 mRNA upstream 254085 31206388 ~ 31237363 (+) True LOC110502091
XM_021579534.2 mRNA downstream 99989 31635510 ~ 31638598 (+) True neurod1
XR_005038821.1 mRNA downstream 108899 31644420 ~ 31736964 (+) False cerkl
XM_021579536.2 mRNA downstream 108902 31644423 ~ 31736964 (+) False cerkl
XM_021579540.2 mRNA downstream 558653 32094174 ~ 32144432 (+) False cwc22
XM_021579541.2 mRNA downstream 558653 32094174 ~ 32144432 (+) True cwc22
TU2058268 other upstream 194029 31293552 ~ 31297419 (+) True G1798597
TU2058247 other upstream 199243 31246481 ~ 31292205 (+) True G1798579
TU2058047 other upstream 600381 30888661 ~ 30891067 (+) False G1798397
TU2059894 other downstream 832115 32367636 ~ 32374181 (+) True LOC110501767
TU2060607 other downstream 1375272 32910793 ~ 32914182 (+) True G1800754
TU2064746 other downstream 4204918 35740439 ~ 35759426 (+) False LOC110501795
TU2064995 other downstream 4339041 35874562 ~ 35875452 (+) True G1804873
TU2065354 other downstream 4828075 36363596 ~ 36363930 (+) True G1805191

Expression Profile