RNA id: TU2059396


Basic Information

Item Value
RNA id TU2059396
length 206
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G1799624
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 31572249 ~ 31572454 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atctgatgcagcactgtaTCATTGAAATAAAAAAAGGAGTGTGGAAAGAGAGGGGTTTTGATGTACCTGTGCTATCTattgagaaacatcattgaatcCCTTAACGGAATGTGTCAACTTCCAATGACCACCTCTATCAGCGGTTCATTCTCCTCCTATTCAGACCGCTCATTCTAGAACCACTAGTACAATAGCCTGTTCTCCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2059262 lncRNA upstream 19774 31503418 ~ 31552475 (+) True G1799506
TU2058337 lncRNA upstream 156282 31378219 ~ 31415967 (+) True G1798661
TU2058288 lncRNA upstream 257221 31313092 ~ 31315028 (+) True G1798615
TU2058276 lncRNA upstream 273016 31298367 ~ 31299233 (+) True G1798604
TU2058271 lncRNA upstream 281042 31289995 ~ 31291207 (+) True G1798600
TU2059402 lncRNA downstream 10568 31583022 ~ 31583533 (+) False G1799630
TU2059403 lncRNA downstream 10774 31583228 ~ 31583964 (+) True G1799630
TU2059477 lncRNA downstream 70289 31642743 ~ 31643059 (+) True G1799693
TU2059510 lncRNA downstream 127899 31700353 ~ 31700765 (+) True G1799723
TU2059483 lncRNA downstream 164306 31736760 ~ 31738039 (+) True cerkl
XM_036959121.1 mRNA upstream 36728 31458011 ~ 31535521 (+) False pde1a
XM_036959123.1 mRNA upstream 36728 31462452 ~ 31535521 (+) False pde1a
XM_036959122.1 mRNA upstream 36728 31491448 ~ 31535521 (+) True pde1a
XM_036959603.1 mRNA upstream 205438 31364542 ~ 31366811 (+) True LOC110501756
XM_021579518.2 mRNA upstream 305120 31249607 ~ 31267129 (+) False dnajc10
XM_021579534.2 mRNA downstream 63056 31635510 ~ 31638598 (+) True neurod1
XR_005038821.1 mRNA downstream 71966 31644420 ~ 31736964 (+) False cerkl
XM_021579536.2 mRNA downstream 71969 31644423 ~ 31736964 (+) False cerkl
XM_021579540.2 mRNA downstream 521720 32094174 ~ 32144432 (+) False cwc22
XM_021579541.2 mRNA downstream 521720 32094174 ~ 32144432 (+) True cwc22
TU2058268 other upstream 274830 31293552 ~ 31297419 (+) True G1798597
TU2058247 other upstream 280044 31246481 ~ 31292205 (+) True G1798579
TU2058047 other upstream 681182 30888661 ~ 30891067 (+) False G1798397
TU2059894 other downstream 795182 32367636 ~ 32374181 (+) True LOC110501767
TU2060607 other downstream 1338339 32910793 ~ 32914182 (+) True G1800754
TU2064746 other downstream 4167985 35740439 ~ 35759426 (+) False LOC110501795
TU2064995 other downstream 4302108 35874562 ~ 35875452 (+) True G1804873
TU2065354 other downstream 4791142 36363596 ~ 36363930 (+) True G1805191

Expression Profile