pde1a (LOC106582264)


Basic Information

Item Value
gene id pde1a
gene name LOC106582264
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 31458011 ~ 31535521 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036959121.1
ATATACTGTAAGAGGAGGCACTGAGAGGAGTCAGGATGCAAGATGCTGCTACCGATCTGCTTTAGTTCATTGCTACTGCACCTTAGTGATAATAAAGGAACCAAACGCAGCAAGCTCTAGGACTTGGATCTATTATACAGCTGCCGATGCTCTGCTTCCCTGGCTGCCTCAGCTGTTTGTAGTTCCCTCAGCGAGGCGCACTGAAAGATTTCTAGGTGGGCTTGATAATTATGCCATAAGCAGCTGACGCTAATTGAACATCTCTAGCATCTCTCAATGGAACTGCCTGGACAAACGGAGCGCCTGTAATGTGAGCGCCGTAGAGGATACTGCTGTTACAGCTTGTGATGCGCATCTACTGGCCACATCACATTACATTGGATCTTGATGTGAGGAAATGCAACTGAACTCCTCTTGGTGAGAGAGGAATCTCTACCTCTGCTTCTGTGTGGTGGAGCCGCTCACCATAGTCTGACTGCTCTGAACGCTCTGTGATCGCAGGATTTGGTGGTGCTGACCCTGTCGTGTCTGATACCATCTGCTACTTCTGCGTTTCCGTACCGCAccaaccctctctgtctgtcaaagGAAcgctacccacctacctacctgcACCGATGTCGTGGATGGATGGAGCATTGCGCAGGAGTGAGGGTTCTATAAAGCAGCGGCACCATCAGTGTACACAGAGCAGTAAAACCGCATGgtgagagagtgatcagagaggtgcaagagagagagacagacagagaaagaaagaaccagagagagagagagagaaacacagagagagaaacagagagaagtactagagagagagatagtgtgagagagagagaaagaaacaaagagagagaggtactCTAGAGAGAGATTAAATCATCTGACAGTCAGACagtgagtgacagtgtgtagtggaGAGTGGTTCCTTCCTGCCTGCATGACAGAGCTGCAGTGTGTGAAgccgctgtctctctctgctctgataaaCTAATAGGTTAATGAGACAAGTAATGCAGGtgctgtagagaggagagaagagacaatACTCCCGTGACTACAGCACAGGGAGGATGCTCtgaggaccagactgaggagtGCTCTTAGGATTCAGGGATTCACACTGCAGAGTGCAGACAGAGGTCTGCTGTACGTACCTGAGATACCGCAGTTAACCGCTGCACCTTATAACACATTCAGCATGGATGAACTGTGTACATACACAGATAGCATGGACAAAAACTCCCTAAAGTACCCAAAGACTGAGCAGACAGAGAAAATGTGGATGCGACTCAAGGGAATGCAGAAGTACAAAAACACATCTCAAAGATTGAGATGCCTGGTGAAGCAGCTGGACAAGGGAGAGGTGAACGTGGTGGACCTGAGGAAGAATATAGAGTATGCAGCCTCTGTTCTAGAGGCAGTCTATATTGATGAAACCAGGCGTCTTCTGGACACTGAGGATGAGCTCAGTGACATCCAGGCGGACTCTGTGCCCATGGAGGTGCGTGATTGGCTGGCCTCAACCTTCACCAGGAAGATGGGCGTGGTCAGGAGACGACCCGAGGAGAAACCACGGTTCAGGAGCATCGTCCATGCCGTGCAGGCTGGCATCTTCGTCGAGagGATGTACAGACGGACGTCTAACATGGCTGGGCTGACGTACCCTCCAGCTGCCATCGCTGTTTTGAAGGATGTAGATAAATGGGCCTTTGATGTGTTTGCCCTCCACGAGGCCAGCAGTGAACACGCATTGAAGTTCCTGGTGTACGAACTGCTCACCCGCTATGATCTGATCAACCGCTTCAGGATTCCAGTTTCATCTCTGGTGACCTTCGTAGAGGCTCTAGAGGTGGGCTACAGCAAACACAGAAACCCCTACCACAACCTCATCCACGCTGCTGACGTCACACAGACAGCACACTATCTGATGCTCCACACTGGCATTATGCACTGGCTCACTGAACTGGACATTCTAGCCATGGTGTTTGCTGCAGCTATCCATGACTTTGAACACACTGGGACAACCAACAACTTTCACATTCAGACCAGgtCAGAGGTGGCCATCCTGTACAATGACCGGTCAGTCCTGGAGAACCACCATGTCAGTGCTGCCTATAGACTTATGCAAGAAGATGAGATGAACATACTGGTCAACCTGTCAAAAGATGACTGGCGagaacTGCGGACTCTGGTGATTGAGATGGTGATGAGTACAGACATGTCCTGCCATTTCCAGCAGATCAAAACCATGAGGAACGCCCTGCAGCAGCCCGAGGGAGTAGACAAGGCTAAAGCCCTATCTCTGATGCTGCATGCAGCTGACATCAGCCACCCAGCCAAGGCCTGGAAGCTGCACTACCGATGGACACAGGCCCTGATGGAGGAGTTCTTCAGACAGGGCGATAAGGAGGTTGAGTTAGGGCTGCCATTCTCCCCTCTGTGTGATCGTAAAGCTACCATGATTGCCCAGTCACAAATAGggtTCATTGACTTCATAGTAGAACCCACattctctgtgttggtggacACGACAGAGAAGATCATTACACCTCTCATAGAGGATACCTTAAAGTCACACGACACTGGTGTCCGCAGGTCAAGTTTGACAGGTAGTGGGTCAGTGACGGTGGTGGAGTCAGTCCAGAGACACAGTGGTCGAGGGTCCAGCCAGGGGGTTGACCAGGGGCTCACTACAGACTATAGCCTGGCTGGCATTGACCTGAAACGGGTCAGACACACACTGGCAGAGGTCAtccaacacaacaaagacagatggaaggagctctctgtacaagAGTTGGCGAGGAAAGAGCAAGCTGAGTTGACTTCTGACCCAGAGGAGGAGTCCCTGATGAACACAGAGGTTACGTTGACTCACACCAGCCCTGAGAGACACAGCCAGGAGCTTCAATCAGAGCCCTTCATTGAACTgatgaacaacacaaacacaaactccAATAACTCTTCCCAGGAGGACTCAGAGCTGGACCACAGTCCTCACAGGCCTCTGTCACCGTCTGAGGATAAAGAGACAACATCACATGGTTCCATCTCTCCTGAACACCTACCATGGAACGGTAGGAATGCTAGCTAGCGATATGATATGATACGATATACGATATGATATACGATACAATATACGATAGAATGTACAATACAACAATGCAACATAATGTAGTGCAACGTAACATAACGCAACACAACAACATGCAATGCAATACAACACAGCACAATAGCACAGTGAAACCAACAGTCATGCCTTTTAACAATGCTGTTGCCCTGTCAGTAAGCTATAGCTATGTGGTATTTTTCTTGTTTCTATAATTGTGTTGTCAGTTACAGCCATCTGTGACCAAGTGTCGAAGAAATAGATAGCTGCCGAGTGGAGGGTTGTCAAGGTTACAGCTGAGTGACGCTGTGTTGTCATGGTAACTGGTGTTGCTTGCAGGAGAAGGCCCTGAGCCAGTCCTTGAGCATGGGGAGGAGTCTCTTCAGAGCCCTTGATTTTGATAGGCTACCCAACAACACTGCCACTTCCTGATTCAACAGGCattatatttgtttgtttttttattgtaaattTGTTCTGAttcattttattgttatttattaaAGATAGGGGTCTTCATGCTCCAAGTGGT
>XM_036959123.1
ACAGGCAGTGGTGTCATCTGCTTCATGGCCCACGTGCCATCAGGCAAATCCACCAGCTCCATCCCAGTGCTTGAGTTTGACGGGGGTGTCGCCATATGAGTTGAACCTCCGCCCTCCGTCAGAGGAACTTCTGCATATAGTCCACCCCACACCTGTTATTTCCTCTCTGCCTTTGACTGGTTTTTGCTGCTCTCTAGCTGCTTGTGGTTGAGCACTCTTCCTGTCCTTCTTCCGCTTCTTCTTCATCTTTCTTGTTTCAGTGTTACCAGAATTCTGTTTCGGGACTGGAGGAGTCATCAGGTCATATCAACTCGGTTCattcacaacaacatacaggggGACATACAGCGACACATTTGTCAATATAGCAGTCCAGGAGAAAATCATTTACAAAATGATTACGCAAAATTTGAGTGATTTAGTTCTTATCTCCTAACTTCTCGTTAAAGATGGTTTcaagttttttaaataaaatgagACAAACACATTTTGTGTGATGCATCATTTACTGCTGTTGATTGCTGTGAGTGTAATAATTTCTTTCCCAACATTCCTCCTCTTCACTGGATCTTCACACCAGATGaaacgtgtgggtgtgtgtgtgttcttgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgagagagagagagagtcctcccCTACCCTACAGATAGAAGGAGACTgactggagagaagagggaaaacAGGAAAAAGAGCTCCTTCATAACTAGTCTGAATCCCCCAGACAATACTGCTCCATAGCAGAAACACACTCATTATTTCTTTCTAGGCAGAAGTACAAAAACACATCTCAAAGATTGAGATGCCTGGTGAAGCAGCTGGACAAGGGAGAGGTGAACGTGGTGGACCTGAGGAAGAATATAGAGTATGCAGCCTCTGTTCTAGAGGCAGTCTATATTGATGAAACCAGGCGTCTTCTGGACACTGAGGATGAGCTCAGTGACATCCAGGCGGACTCTGTGCCCATGGAGGTGCGTGATTGGCTGGCCTCAACCTTCACCAGGAAGATGGGCGTGGTCAGGAGACGACCCGAGGAGAAACCACGGTTCAGGAGCATCGTCCATGCCGTGCAGGCTGGCATCTTCGTCGAGagGATGTACAGACGGACGTCTAACATGGCTGGGCTGACGTACCCTCCAGCTGCCATCGCTGTTTTGAAGGATGTAGATAAATGGGCCTTTGATGTGTTTGCCCTCCACGAGGCCAGCAGTGAACACGCATTGAAGTTCCTGGTGTACGAACTGCTCACCCGCTATGATCTGATCAACCGCTTCAGGATTCCAGTTTCATCTCTGGTGACCTTCGTAGAGGCTCTAGAGGTGGGCTACAGCAAACACAGAAACCCCTACCACAACCTCATCCACGCTGCTGACGTCACACAGACAGCACACTATCTGATGCTCCACACTGGCATTATGCACTGGCTCACTGAACTGGACATTCTAGCCATGGTGTTTGCTGCAGCTATCCATGACTTTGAACACACTGGGACAACCAACAACTTTCACATTCAGACCAGgtCAGAGGTGGCCATCCTGTACAATGACCGGTCAGTCCTGGAGAACCACCATGTCAGTGCTGCCTATAGACTTATGCAAGAAGATGAGATGAACATACTGGTCAACCTGTCAAAAGATGACTGGCGagaacTGCGGACTCTGGTGATTGAGATGGTGATGAGTACAGACATGTCCTGCCATTTCCAGCAGATCAAAACCATGAGGAACGCCCTGCAGCAGCCCGAGGGAGTAGACAAGGCTAAAGCCCTATCTCTGATGCTGCATGCAGCTGACATCAGCCACCCAGCCAAGGCCTGGAAGCTGCACTACCGATGGACACAGGCCCTGATGGAGGAGTTCTTCAGACAGGGCGATAAGGAGGTTGAGTTAGGGCTGCCATTCTCCCCTCTGTGTGATCGTAAAGCTACCATGATTGCCCAGTCACAAATAGggtTCATTGACTTCATAGTAGAACCCACattctctgtgttggtggacACGACAGAGAAGATCATTACACCTCTCATAGAGGATACCTTAAAGTCACACGACACTGGTGTCCGCAGGTCAAGTTTGACAGGTAGTGGGTCAGTGACGGTGGTGGAGTCAGTCCAGAGACACAGTGGTCGAGGGTCCAGCCAGGGGGTTGACCAGGGGCTCACTACAGACTATAGCCTGGCTGGCATTGACCTGAAACGGGTCAGACACACACTGGCAGAGGTCAtccaacacaacaaagacagatggaaggagctctctgtacaagAGTTGGCGAGGAAAGAGCAAGCTGAGTTGACTTCTGACCCAGAGGAGGAGTCCCTGATGAACACAGAGGTTACGTTGACTCACACCAGCCCTGAGAGACACAGCCAGGAGCTTCAATCAGAGCCCTTCATTGAACTgatgaacaacacaaacacaaactccAATAACTCTTCCCAGGAGGACTCAGAGCTGGACCACAGTCCTCACAGGCCTCTGTCACCGTCTGAGGATAAAGAGACAACATCACATGGTTCCATCTCTCCTGAACACCTACCATGGAACGGTAGGAATGCTAGCTAGCGATATGATATGATACGATATACGATATGATATACGATACAATATACGATAGAATGTACAATACAACAATGCAACATAATGTAGTGCAACGTAACATAACGCAACACAACAACATGCAATGCAATACAACACAGCACAATAGCACAGTGAAACCAACAGTCATGCCTTTTAACAATGCTGTTGCCCTGTCAGTAAGCTATAGCTATGTGGTATTTTTCTTGTTTCTATAATTGTGTTGTCAGTTACAGCCATCTGTGACCAAGTGTCGAAGAAATAGATAGCTGCCGAGTGGAGGGTTGTCAAGGTTACAGCTGAGTGACGCTGTGTTGTCATGGTAACTGGTGTTGCTTGCAGGAGAAGGCCCTGAGCCAGTCCTTGAGCATGGGGAGGAGTCTCTTCAGAGCCCTTGATTTTGATAGGCTACCCAACAACACTGCCACTTCCTGATTCAACAGGCattatatttgtttgtttttttattgtaaattTGTTCTGAttcattttattgttatttattaaAGATAGGGGTCTTCATGCTCCAAGTGGT
>XM_036959122.1
caGTGAGAGGGGCAGGACCAGGAACTAGGGGGACTAGCAGGGACCAGGCAGGACTAGTCGTCTCAGTCTCAGAGCAGCACAGTGCAACGCAAGGAGAGGAGCAGCTGGAGACAGCCCAGCCTCATACAGAGCTCCCTGCTCCTATCCCCAACCCAGTCTGGACTCACACTTTAAATGGAAGAGTATGTCACgatcaagaggaagcttctccaCAGACCCGTCTTCAGATTGAGATGCCTGGTGAAGCAGCTGGACAAGGGAGAGGTGAACGTGGTGGACCTGAGGAAGAATATAGAGTATGCAGCCTCTGTTCTAGAGGCAGTCTATATTGATGAAACCAGGCGTCTTCTGGACACTGAGGATGAGCTCAGTGACATCCAGGCGGACTCTGTGCCCATGGAGGTGCGTGATTGGCTGGCCTCAACCTTCACCAGGAAGATGGGCGTGGTCAGGAGACGACCCGAGGAGAAACCACGGTTCAGGAGCATCGTCCATGCCGTGCAGGCTGGCATCTTCGTCGAGagGATGTACAGACGGACGTCTAACATGGCTGGGCTGACGTACCCTCCAGCTGCCATCGCTGTTTTGAAGGATGTAGATAAATGGGCCTTTGATGTGTTTGCCCTCCACGAGGCCAGCAGTGAACACGCATTGAAGTTCCTGGTGTACGAACTGCTCACCCGCTATGATCTGATCAACCGCTTCAGGATTCCAGTTTCATCTCTGGTGACCTTCGTAGAGGCTCTAGAGGTGGGCTACAGCAAACACAGAAACCCCTACCACAACCTCATCCACGCTGCTGACGTCACACAGACAGCACACTATCTGATGCTCCACACTGGCATTATGCACTGGCTCACTGAACTGGACATTCTAGCCATGGTGTTTGCTGCAGCTATCCATGACTTTGAACACACTGGGACAACCAACAACTTTCACATTCAGACCAGgtCAGAGGTGGCCATCCTGTACAATGACCGGTCAGTCCTGGAGAACCACCATGTCAGTGCTGCCTATAGACTTATGCAAGAAGATGAGATGAACATACTGGTCAACCTGTCAAAAGATGACTGGCGagaacTGCGGACTCTGGTGATTGAGATGGTGATGAGTACAGACATGTCCTGCCATTTCCAGCAGATCAAAACCATGAGGAACGCCCTGCAGCAGCCCGAGGGAGTAGACAAGGCTAAAGCCCTATCTCTGATGCTGCATGCAGCTGACATCAGCCACCCAGCCAAGGCCTGGAAGCTGCACTACCGATGGACACAGGCCCTGATGGAGGAGTTCTTCAGACAGGGCGATAAGGAGGTTGAGTTAGGGCTGCCATTCTCCCCTCTGTGTGATCGTAAAGCTACCATGATTGCCCAGTCACAAATAGggtTCATTGACTTCATAGTAGAACCCACattctctgtgttggtggacACGACAGAGAAGATCATTACACCTCTCATAGAGGATACCTTAAAGTCACACGACACTGGTGTCCGCAGGTCAAGTTTGACAGGTAGTGGGTCAGTGACGGTGGTGGAGTCAGTCCAGAGACACAGTGGTCGAGGGTCCAGCCAGGGGGTTGACCAGGGGCTCACTACAGACTATAGCCTGGCTGGCATTGACCTGAAACGGGTCAGACACACACTGGCAGAGGTCAtccaacacaacaaagacagatggaaggagctctctgtacaagAGTTGGCGAGGAAAGAGCAAGCTGAGTTGACTTCTGACCCAGAGGAGGAGTCCCTGATGAACACAGAGGTTACGTTGACTCACACCAGCCCTGAGAGACACAGCCAGGAGCTTCAATCAGAGCCCTTCATTGAACTgatgaacaacacaaacacaaactccAATAACTCTTCCCAGGAGGACTCAGAGCTGGACCACAGTCCTCACAGGCCTCTGTCACCGTCTGAGGATAAAGAGACAACATCACATGGTTCCATCTCTCCTGAACACCTACCATGGAACGGTAGGAATGCTAGCTAGCGATATGATATGATACGATATACGATATGATATACGATACAATATACGATAGAATGTACAATACAACAATGCAACATAATGTAGTGCAACGTAACATAACGCAACACAACAACATGCAATGCAATACAACACAGCACAATAGCACAGTGAAACCAACAGTCATGCCTTTTAACAATGCTGTTGCCCTGTCAGTAAGCTATAGCTATGTGGTATTTTTCTTGTTTCTATAATTGTGTTGTCAGTTACAGCCATCTGTGACCAAGTGTCGAAGAAATAGATAGCTGCCGAGTGGAGGGTTGTCAAGGTTACAGCTGAGTGACGCTGTGTTGTCATGGTAACTGGTGTTGCTTGCAGGAGAAGGCCCTGAGCCAGTCCTTGAGCATGGGGAGGAGTCTCTTCAGAGCCCTTGATTTTGATAGGCTACCCAACAACACTGCCACTTCCTGATTCAACAGGCattatatttgtttgtttttttattgtaaattTGTTCTGAttcattttattgttatttattaaAGATAGGGGTCTTCATGCTCCAAGTGGT

Function

NR:

description
calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform X2

GO: NA

KEGG:

id description
K13755 PDE1; calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036959121.1 False 3644 mRNA 0.49 15 31458011 31535521
XM_036959123.1 False 3136 mRNA 0.48 15 31462452 31535521
XM_036959122.1 True 2542 mRNA 0.50 14 31491448 31535521

Neighbor

gene id symbol gene type direction distance location
LOC110501756 LOC106586411 coding upstream 91200 31364542 ~ 31366811 (+)
dnajc10 LOC106582260 coding upstream 190882 31249607 ~ 31267129 (+)
LOC110502091 LOC106582258 coding upstream 220648 31206388 ~ 31237363 (+)
LOC110501750 LOC106582256 coding upstream 270613 31089015 ~ 31187398 (+)
LOC110501749 LOC106582255 coding upstream 383721 31067493 ~ 31074290 (+)
neurod1 LOC106582267 coding downstream 99989 31635510 ~ 31638598 (+)
cerkl cerkl coding downstream 108899 31644420 ~ 31738039 (+)
cwc22 LOC106582271 coding downstream 558653 32094174 ~ 32144432 (+)
znf385b znf385b coding downstream 619774 32155295 ~ 32312355 (+)
LOC110501767 LOC106582273 coding downstream 781602 32317123 ~ 32374208 (+)
G1798661 NA non-coding upstream 42044 31378219 ~ 31415967 (+)
G1798615 NA non-coding upstream 142983 31313092 ~ 31315028 (+)
G1798604 LOC107601366 non-coding upstream 158778 31298367 ~ 31299233 (+)
G1798600 LOC106586471 non-coding upstream 166804 31289995 ~ 31291207 (+)
G1798596 NA non-coding upstream 168345 31284091 ~ 31289666 (+)
G1799624 NA non-coding downstream 36728 31572249 ~ 31572454 (+)
G1799630 NA non-coding downstream 47501 31583022 ~ 31583964 (+)
G1799693 NA non-coding downstream 107222 31642743 ~ 31643059 (+)
G1799723 NA non-coding downstream 164832 31700353 ~ 31700765 (+)
G1798597 NA other upstream 160592 31293552 ~ 31297419 (+)
G1798579 NA other upstream 165806 31246481 ~ 31292205 (+)
G1798397 NA other upstream 566944 30888661 ~ 30891067 (+)
G1798168 NA other upstream 912057 30500656 ~ 30545954 (+)
LOC118943632 LOC100194703 other upstream 1532629 29917773 ~ 29933035 (+)
G1800754 NA other downstream 1375272 32910793 ~ 32914182 (+)
LOC110501795 LOC106596205 other downstream 4204918 35740427 ~ 35760519 (+)
G1804873 NA other downstream 4339041 35874562 ~ 35875452 (+)
G1805191 NA other downstream 4828075 36363596 ~ 36363930 (+)

Expression


Co-expression Network