LOC110502148 (rab3gap1)


Basic Information

Item Value
gene id LOC110502148
gene name rab3gap1
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 40216020 ~ 40263466 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110502148
atggcagagcgatttctgcatattgcacattTTAAGTATCCAGTCTGTGTTTGCAGGTATGGCATGTGTGAGTTTGTGGTCATCTCCCCTGGGGCCAACTGGGAGGCAGTCATCAGTGAGTCCAAGTGCAACCTGCTCCTcagctctgtctccatctctctggccaACACAGGCTGCCAGGTGCCGATGTTTGTTCAGGTCCAGCAGAAGTGGAGGAGGATGTACCATGGGGAGTGCCAGGGACCGGGGGCGCGTACAGACCTTGAGATGGTCCACCTCCGCAAGGTGCCCAGACAATACAACCACCTCTCAGGCCTGCTGGACATCTTTAAGTCCAAGACGGTCTGTCCCCTGTCTCCTCGTCCTCCCATCAACATCGCTATCCGCTTCACGTACGTCCTGCAGGACTGGCAGCAGTACTCCTGGCCTCAGCTGCCCCCAGACTTCGACGGTCTCCTCAGAGGGGAGGTAGGAGGGGTGGAGTTTGGGAAGCTGCAGTTCGGAGCGTGTGAGGATCCAATCAGTGAGCTTCACCTATTGACCACCTGGCCCCACCCGACAGAAGGTATCATGGTGGATAACGACGTGTACTCTGACCTGGACCCACTCCAGGCCCCTCATTTGTCAGTCCGAGTCAGGAGCACAGACAACCCCACGTGCTTGCTCGGTGACTTCCTGACAGAGTTCTTTAGGCTGTGCTCCAAGAAGGAGTCAGAGGAGATTCTGGGAAGAGGTCCATTTGAGGAGGAAGACGCAGCCACAGGTAAACAGTCATCAGAGAACAGCGAGAGAAAGGCTGCTCCATCACACACCGACGGGGAACCAGAAGAGAAGGATTCTGACGACTATAGCCTGTACAACCAGCCGAAGTCTGCTCCTAGTAACAGTGTAGCGTACCTCCTGGCTCTGTGTCTGGTTAACTTCTACCTTGGAGGGGTCCGGGCCGTGGCTCACCTCTGGCAGAAGTTTGTCCTGGGGATGAGATACCGTTGGGAGAACAACGACCTCGTCTATGGACTGGTCGGTGGTCCCCCACACCTCCTCTGCTGTCTCCTCCACCAGAAACTCCAAATGCTCAACTGCTGCAccgagagcaagagagcgagggaTGACGGGAGGAAAATGgcgaaaggagggagaaagagggagagaaaagtgtCAGGGTCGAGAATGGGTGCCTGGGACCGGAGAGTGCGGCAACGGTGGTGGGCGCGATAGAGGTGTCTCCTGGGAAGTCACGGGACACGTGGAGCTACAGCGAGAGCGAAGACGAGTTCTTTGAGTGTCTGAGGGACACAGAGCTGGTGAAGGACGGTCCCTCTACAGACGACAAGAAGGGCGGGGCTAAAGAGGACGGGGCATAGGCGGGCAAGCCGGAGGGTCGGCTCCACCCACACGGGAAGTTGACCCTGCTCAGCTCCACGGAACCCCTGTACATCCCTGTCACTcagGAGCCAGCGCCCATGACAGAGGACCTGCTGGAGGAGCAGTCGGAGGTGTTGGCCAAACTGGGCACGTCAGCCACGTCATGCCCACCTCCGCGCTCGCATGCAGAGTGCCTGTCTGCTCTCAGACATGGAGTCTTTTAAGGCAGCGAATCCGGGCTGTACCCTGGAGGACTTTGTGCGGTGGTACTCCCCCAGGGACTACtttgaggaggaggtggtggacgAGAGCGGGGACACGGTGGTCAGGGGCGACCTGAGTGCCAGGATGAAGATCCCGGGGAACATGTGGATGGAGCCGTGGGCCACAGCCAAGACCACCCCTGCTCGCAGACGGGGATGCCTGTTTGACGACACCAAGGAAGCTGAGAAGgTGCTGCACTACTTGGCAGTACAGAAGCCAGCAGACCTGACCTGCCATCCCCTGCCTTGCATCCTCCACACTGCCATCCTAAAGGAAAAGGAGGAagagTCCGAAGAGGACATCCTATCTGCAAGAAAGGCCATCCAACAGGCCACCTCTCATGCCGGTAAGCTGCTGCGCCACCCCAGCCCAGACTACAAGAAACTGGAGGATGTGATCAGCCAGCTGATTGCGGTGGAGATGGTCATTGCCCGCTCCCGCTCTCTGAAGTCTAAGTTTGGCATCGGGAAGGCAGAACCGGGCAAAGACGCAGAGAATCTGGAGAGgttcgTGAGATCTTTGCTGGAGGAACCTGAGGTGTCTGTGATCAGAGCAGGGTGCGGTCCAGCCAGCAGCATCATTCACAAGCTGTTTGTCAGCGCTCAGAGGGTAAAACACACTGTCACCACCACCCAGGGAAACAGACAAACTCACACCGTCTCCCACAGGGGCCTGTCCTAA
>TU2070206
GACGACATCAGCCCTGTCTAAACTGACGGAGCCCACAGCCGTGCCCATCCCCAAGCTGTCTGTCTCCAACATGGTGCACAGCGCCCGCTAACGCTAACGCCGCCACCGCCGCATTGACGAATCACCGCTCAGAAATGACGTGCTCAACTCTATACTGCTGTATCTCTTCCCAGACGCAGCCACAGGTAAACAGTCATCAGAGAACAGCGAGAGAAAGGCTGCTCCATCACACACCGACGGGGAACCAGAAGAGAAGGATTCTGACGACTATAGCCTGTACAACCAGCCGAAGTCTGCTCCTAGTAACAGTGTAGCGT

Function

symbol description
rab3gap1 Predicted to enable GTPase activator activity. Predicted to be involved in positive regulation of GTPase activity. Predicted to be located in cytoplasm. Human ortholog(s) of this gene implicated in Warburg micro syndrome 1. Orthologous to human RAB3GAP1 (RAB3 GTPase activating protein catalytic subunit 1).

NR:

description
PREDICTED: rab3 GTPase-activating protein catalytic subunit

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110502148 False 2310 mRNA 0.55 17 40216020 40263466
TU2070206 True 317 lncRNA 0.55 3 40224992 40226173

Neighbor

gene id symbol gene type direction distance location
LOC110501869 ccnt2 coding upstream 15582 40190583 ~ 40200438 (+)
acmsd acmsd coding upstream 30560 40171735 ~ 40185460 (+)
LOC118943662 NA coding upstream 302980 39912913 ~ 39913040 (+)
si:ch73-116o1.2 LOC106582394 coding upstream 303158 39890643 ~ 39912862 (+)
LOC110501860 LOC106582389 coding upstream 649396 39478254 ~ 39566624 (+)
LOC110501870 r3hdm1 coding downstream 94481 40357947 ~ 40418247 (+)
LOC118943589 NA coding downstream 116767 40380233 ~ 40386211 (+)
ubxn4 ubxn4 coding downstream 175698 40439164 ~ 40449478 (+)
nmi LOC106582386 coding downstream 231400 40494866 ~ 40500658 (+)
LOC110501874 LOC106582403 coding downstream 286607 40550073 ~ 40558749 (+)
G1809401 NA non-coding upstream 10537 40176636 ~ 40205483 (+)
G1809159 NA non-coding upstream 132053 40080106 ~ 40083967 (+)
G1809175 NA non-coding upstream 177424 40038236 ~ 40038596 (+)
G1809174 NA non-coding upstream 178292 40037423 ~ 40037728 (+)
G1809173 NA non-coding upstream 178716 40037028 ~ 40037304 (+)
G1809499 NA non-coding downstream 3530 40266996 ~ 40267411 (+)
G1809504 NA non-coding downstream 6724 40270190 ~ 40270565 (+)
G1809514 NA non-coding downstream 13836 40277302 ~ 40277852 (+)
G1809516 NA non-coding downstream 15534 40279000 ~ 40279369 (+)
G1809544 NA non-coding downstream 31018 40294484 ~ 40294757 (+)
G1809107 NA other upstream 290625 39924414 ~ 39925395 (+)
G1808787 NA other upstream 521152 39693913 ~ 39694868 (+)
G1808209 NA other upstream 1064687 39149080 ~ 39151333 (+)
G1807566 NA other upstream 1352884 38862740 ~ 38863136 (+)
G1807376 NA other upstream 1804857 38406137 ~ 38411163 (+)
G1810553 NA other downstream 926223 41189689 ~ 41192492 (+)
G1810740 NA other downstream 1201012 41464478 ~ 41466349 (+)
LOC110501889 LOC106582433 other downstream 1993089 42256417 ~ 42389468 (+)
G1812428 NA other downstream 2460206 42723672 ~ 42724114 (+)
LOC110502157 LOC106582435 other downstream 2466135 42688215 ~ 42735867 (+)
G1809450 NA non-coding downstream 305 40226478 ~ 40226683 (+)
G1809469 NA non-coding downstream 23066 40249239 ~ 40249526 (+)

Expression


Co-expression Network