RNA id: LOC110502148


Basic Information

Item Value
RNA id LOC110502148
length 2310
RNA type mRNA
GC content 0.55
exon number 17
gene id LOC110502148
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 40216020 ~ 40263466 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atggcagagcgatttctgcatattgcacattTTAAGTATCCAGTCTGTGTTTGCAGGTATGGCATGTGTGAGTTTGTGGTCATCTCCCCTGGGGCCAACTGGGAGGCAGTCATCAGTGAGTCCAAGTGCAACCTGCTCCTcagctctgtctccatctctctggccaACACAGGCTGCCAGGTGCCGATGTTTGTTCAGGTCCAGCAGAAGTGGAGGAGGATGTACCATGGGGAGTGCCAGGGACCGGGGGCGCGTACAGACCTTGAGATGGTCCACCTCCGCAAGGTGCCCAGACAATACAACCACCTCTCAGGCCTGCTGGACATCTTTAAGTCCAAGACGGTCTGTCCCCTGTCTCCTCGTCCTCCCATCAACATCGCTATCCGCTTCACGTACGTCCTGCAGGACTGGCAGCAGTACTCCTGGCCTCAGCTGCCCCCAGACTTCGACGGTCTCCTCAGAGGGGAGGTAGGAGGGGTGGAGTTTGGGAAGCTGCAGTTCGGAGCGTGTGAGGATCCAATCAGTGAGCTTCACCTATTGACCACCTGGCCCCACCCGACAGAAGGTATCATGGTGGATAACGACGTGTACTCTGACCTGGACCCACTCCAGGCCCCTCATTTGTCAGTCCGAGTCAGGAGCACAGACAACCCCACGTGCTTGCTCGGTGACTTCCTGACAGAGTTCTTTAGGCTGTGCTCCAAGAAGGAGTCAGAGGAGATTCTGGGAAGAGGTCCATTTGAGGAGGAAGACGCAGCCACAGGTAAACAGTCATCAGAGAACAGCGAGAGAAAGGCTGCTCCATCACACACCGACGGGGAACCAGAAGAGAAGGATTCTGACGACTATAGCCTGTACAACCAGCCGAAGTCTGCTCCTAGTAACAGTGTAGCGTACCTCCTGGCTCTGTGTCTGGTTAACTTCTACCTTGGAGGGGTCCGGGCCGTGGCTCACCTCTGGCAGAAGTTTGTCCTGGGGATGAGATACCGTTGGGAGAACAACGACCTCGTCTATGGACTGGTCGGTGGTCCCCCACACCTCCTCTGCTGTCTCCTCCACCAGAAACTCCAAATGCTCAACTGCTGCAccgagagcaagagagcgagggaTGACGGGAGGAAAATGgcgaaaggagggagaaagagggagagaaaagtgtCAGGGTCGAGAATGGGTGCCTGGGACCGGAGAGTGCGGCAACGGTGGTGGGCGCGATAGAGGTGTCTCCTGGGAAGTCACGGGACACGTGGAGCTACAGCGAGAGCGAAGACGAGTTCTTTGAGTGTCTGAGGGACACAGAGCTGGTGAAGGACGGTCCCTCTACAGACGACAAGAAGGGCGGGGCTAAAGAGGACGGGGCATAGGCGGGCAAGCCGGAGGGTCGGCTCCACCCACACGGGAAGTTGACCCTGCTCAGCTCCACGGAACCCCTGTACATCCCTGTCACTcagGAGCCAGCGCCCATGACAGAGGACCTGCTGGAGGAGCAGTCGGAGGTGTTGGCCAAACTGGGCACGTCAGCCACGTCATGCCCACCTCCGCGCTCGCATGCAGAGTGCCTGTCTGCTCTCAGACATGGAGTCTTTTAAGGCAGCGAATCCGGGCTGTACCCTGGAGGACTTTGTGCGGTGGTACTCCCCCAGGGACTACtttgaggaggaggtggtggacgAGAGCGGGGACACGGTGGTCAGGGGCGACCTGAGTGCCAGGATGAAGATCCCGGGGAACATGTGGATGGAGCCGTGGGCCACAGCCAAGACCACCCCTGCTCGCAGACGGGGATGCCTGTTTGACGACACCAAGGAAGCTGAGAAGgTGCTGCACTACTTGGCAGTACAGAAGCCAGCAGACCTGACCTGCCATCCCCTGCCTTGCATCCTCCACACTGCCATCCTAAAGGAAAAGGAGGAagagTCCGAAGAGGACATCCTATCTGCAAGAAAGGCCATCCAACAGGCCACCTCTCATGCCGGTAAGCTGCTGCGCCACCCCAGCCCAGACTACAAGAAACTGGAGGATGTGATCAGCCAGCTGATTGCGGTGGAGATGGTCATTGCCCGCTCCCGCTCTCTGAAGTCTAAGTTTGGCATCGGGAAGGCAGAACCGGGCAAAGACGCAGAGAATCTGGAGAGgttcgTGAGATCTTTGCTGGAGGAACCTGAGGTGTCTGTGATCAGAGCAGGGTGCGGTCCAGCCAGCAGCATCATTCACAAGCTGTTTGTCAGCGCTCAGAGGGTAAAACACACTGTCACCACCACCCAGGGAAACAGACAAACTCACACCGTCTCCCACAGGGGCCTGTCCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2070154 lncRNA upstream 10537 40176636 ~ 40205483 (+) True G1809401
TU2069895 lncRNA upstream 132053 40080106 ~ 40083967 (+) True G1809159
TU2069911 lncRNA upstream 177424 40038236 ~ 40038596 (+) True G1809175
TU2069910 lncRNA upstream 178292 40037423 ~ 40037728 (+) True G1809174
TU2069909 lncRNA upstream 178716 40037028 ~ 40037304 (+) True G1809173
TU2070260 lncRNA downstream 3530 40266996 ~ 40267411 (+) True G1809499
TU2070265 lncRNA downstream 6724 40270190 ~ 40270565 (+) True G1809504
TU2070275 lncRNA downstream 13836 40277302 ~ 40277852 (+) True G1809514
TU2070277 lncRNA downstream 15534 40279000 ~ 40279369 (+) True G1809516
TU2070305 lncRNA downstream 31018 40294484 ~ 40294757 (+) True G1809544
XM_021579717.2 mRNA upstream 15582 40190584 ~ 40200438 (+) True LOC110501869
XM_021579718.2 mRNA upstream 17928 40190583 ~ 40198092 (+) False LOC110501869
XR_005038836.1 mRNA upstream 18865 40190583 ~ 40197155 (+) False LOC110501869
XM_021579716.2 mRNA upstream 30560 40171735 ~ 40185460 (+) True acmsd
LOC118943662 mRNA upstream 302980 39912913 ~ 39913040 (+) True LOC118943662
XM_036959308.1 mRNA downstream 94481 40357947 ~ 40418247 (+) False LOC110501870
XM_036959307.1 mRNA downstream 95066 40358532 ~ 40418247 (+) False LOC110501870
XM_036959316.1 mRNA downstream 116516 40379982 ~ 40416827 (+) False LOC110501870
XM_036959306.1 mRNA downstream 116516 40379982 ~ 40418247 (+) False LOC110501870
XM_036959310.1 mRNA downstream 116516 40379982 ~ 40418247 (+) False LOC110501870
TU2069833 other upstream 290625 39924414 ~ 39925395 (+) True G1809107
TU2069485 other upstream 521152 39693913 ~ 39694868 (+) True G1808787
TU2068780 other upstream 1064687 39149080 ~ 39151333 (+) True G1808209
TU2068019 other upstream 1352884 38862740 ~ 38863136 (+) True G1807566
TU2067810 other upstream 1804857 38406137 ~ 38411163 (+) True G1807376
TU2071418 other downstream 926223 41189689 ~ 41192492 (+) True G1810553
TU2071621 other downstream 1201012 41464478 ~ 41466349 (+) True G1810740
TU2072842 other downstream 1993089 42256555 ~ 42308216 (+) False LOC110501889
TU2072841 other downstream 2065807 42329273 ~ 42340392 (+) False LOC110501889
TU2072843 other downstream 2108840 42372306 ~ 42389287 (+) True LOC110501889

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00074861 True 2909 mRNA 0.59 27 NC_007120.7 56336873 ~ 56399699 (-)