RNA id: TU2070277


Basic Information

Item Value
RNA id TU2070277
length 370
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G1809516
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 40279000 ~ 40279369 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttttttttttgccaaaattttaaatacaaatatttttgctttgtcattatggggtattgtgtgtagattgatgagggggaaaataatttaatcaattttagaataagtacaaaaatgtggaaaaggtctaggggtatgaattctttccaaatgcactgtatatactagaTTTAGCCTGCTGGTTTTATAGTTAAGTGTTTTGGTAGGTTGTTGTGTTTGATACCAGTTGGCTTTAGATATTAGCATAGTGTGGCTTTGTTGTGTTTGATACCAGTTGGTTTTAGATATTAGCATAGTGTGGCTTTGTTGTGTTTGATACCAGTTGGCTTTAGATATTAGCATAGTGTGGCTTTGTTGTGTTTGATACCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2070275 lncRNA upstream 1148 40277302 ~ 40277852 (+) True G1809514
TU2070265 lncRNA upstream 8435 40270190 ~ 40270565 (+) True G1809504
TU2070260 lncRNA upstream 11589 40266996 ~ 40267411 (+) True G1809499
TU2070230 lncRNA upstream 29474 40249239 ~ 40249526 (+) True G1809469
TU2070209 lncRNA upstream 52317 40226478 ~ 40226683 (+) True G1809450
TU2070305 lncRNA downstream 15115 40294484 ~ 40294757 (+) True G1809544
TU2070363 lncRNA downstream 56172 40335541 ~ 40428461 (+) True G1809582
TU2070582 lncRNA downstream 237185 40516554 ~ 40516781 (+) True G1809774
TU2070589 lncRNA downstream 243810 40523179 ~ 40523423 (+) True G1809781
TU2070592 lncRNA downstream 244938 40524307 ~ 40524652 (+) True G1809784
LOC110502148 mRNA upstream 15534 40216020 ~ 40263466 (+) False LOC110502148
XM_021579717.2 mRNA upstream 78562 40190584 ~ 40200438 (+) True LOC110501869
XM_021579718.2 mRNA upstream 80908 40190583 ~ 40198092 (+) False LOC110501869
XR_005038836.1 mRNA upstream 81845 40190583 ~ 40197155 (+) False LOC110501869
XM_021579716.2 mRNA upstream 93540 40171735 ~ 40185460 (+) True acmsd
XM_036959308.1 mRNA downstream 78578 40357947 ~ 40418247 (+) False LOC110501870
XM_036959307.1 mRNA downstream 79163 40358532 ~ 40418247 (+) False LOC110501870
XM_036959316.1 mRNA downstream 100613 40379982 ~ 40416827 (+) False LOC110501870
XM_036959306.1 mRNA downstream 100613 40379982 ~ 40418247 (+) False LOC110501870
XM_036959310.1 mRNA downstream 100613 40379982 ~ 40418247 (+) False LOC110501870
TU2069833 other upstream 353605 39924414 ~ 39925395 (+) True G1809107
TU2069485 other upstream 584132 39693913 ~ 39694868 (+) True G1808787
TU2068780 other upstream 1127667 39149080 ~ 39151333 (+) True G1808209
TU2068019 other upstream 1415864 38862740 ~ 38863136 (+) True G1807566
TU2067810 other upstream 1867837 38406137 ~ 38411163 (+) True G1807376
TU2071418 other downstream 910320 41189689 ~ 41192492 (+) True G1810553
TU2071621 other downstream 1185109 41464478 ~ 41466349 (+) True G1810740
TU2072842 other downstream 1977186 42256555 ~ 42308216 (+) False LOC110501889
TU2072841 other downstream 2049904 42329273 ~ 42340392 (+) False LOC110501889
TU2072843 other downstream 2092937 42372306 ~ 42389287 (+) True LOC110501889

Expression Profile