RNA id: TU2070265


Basic Information

Item Value
RNA id TU2070265
length 376
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G1809504
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 40270190 ~ 40270565 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgctaatcctttgcacatgaacgctcactcattcgggaacaattgcaatcaatatatatatttacgctcagtgtgtttTTGGGGTCTCTGTTGAAAGTTTGCTTCTGTTGGAGAATTTGTCTgccctctctgtcgtggttagaatggatagttcagagtgacattcattaatGTCGTTAtggatagatgtttcggcggttgtcggtcttcgcattcaatgataccgaattcctagctgcagactagtaattaatatcaaagacttgttcttattctgtcggtatcgatagtcttaagagtttaaccacatgggatggttaaaagattcagcagtctggtctgcaaccttttgtcctctcgtaattgagagCAACAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2070260 lncRNA upstream 2779 40266996 ~ 40267411 (+) True G1809499
TU2070230 lncRNA upstream 20664 40249239 ~ 40249526 (+) True G1809469
TU2070209 lncRNA upstream 43507 40226478 ~ 40226683 (+) True G1809450
TU2070206 lncRNA upstream 44017 40224992 ~ 40226173 (+) True LOC110502148
TU2070154 lncRNA upstream 64707 40176636 ~ 40205483 (+) True G1809401
TU2070275 lncRNA downstream 6737 40277302 ~ 40277852 (+) True G1809514
TU2070277 lncRNA downstream 8435 40279000 ~ 40279369 (+) True G1809516
TU2070305 lncRNA downstream 23919 40294484 ~ 40294757 (+) True G1809544
TU2070363 lncRNA downstream 64976 40335541 ~ 40428461 (+) True G1809582
TU2070582 lncRNA downstream 245989 40516554 ~ 40516781 (+) True G1809774
LOC110502148 mRNA upstream 6724 40216020 ~ 40263466 (+) False LOC110502148
XM_021579717.2 mRNA upstream 69752 40190584 ~ 40200438 (+) True LOC110501869
XM_021579718.2 mRNA upstream 72098 40190583 ~ 40198092 (+) False LOC110501869
XR_005038836.1 mRNA upstream 73035 40190583 ~ 40197155 (+) False LOC110501869
XM_021579716.2 mRNA upstream 84730 40171735 ~ 40185460 (+) True acmsd
XM_036959308.1 mRNA downstream 87382 40357947 ~ 40418247 (+) False LOC110501870
XM_036959307.1 mRNA downstream 87967 40358532 ~ 40418247 (+) False LOC110501870
XM_036959316.1 mRNA downstream 109417 40379982 ~ 40416827 (+) False LOC110501870
XM_036959306.1 mRNA downstream 109417 40379982 ~ 40418247 (+) False LOC110501870
XM_036959310.1 mRNA downstream 109417 40379982 ~ 40418247 (+) False LOC110501870
TU2069833 other upstream 344795 39924414 ~ 39925395 (+) True G1809107
TU2069485 other upstream 575322 39693913 ~ 39694868 (+) True G1808787
TU2068780 other upstream 1118857 39149080 ~ 39151333 (+) True G1808209
TU2068019 other upstream 1407054 38862740 ~ 38863136 (+) True G1807566
TU2067810 other upstream 1859027 38406137 ~ 38411163 (+) True G1807376
TU2071418 other downstream 919124 41189689 ~ 41192492 (+) True G1810553
TU2071621 other downstream 1193913 41464478 ~ 41466349 (+) True G1810740
TU2072842 other downstream 1985990 42256555 ~ 42308216 (+) False LOC110501889
TU2072841 other downstream 2058708 42329273 ~ 42340392 (+) False LOC110501889
TU2072843 other downstream 2101741 42372306 ~ 42389287 (+) True LOC110501889

Expression Profile