LOC118943640 (LOC106582482)


Basic Information

Item Value
gene id LOC118943640
gene name LOC106582482
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 43667903 ~ 43669453 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036959595.1
ACAGGGTCACACACAGGACCAAGCAGGAGCAGGACCTCAGCATTTTGACCCTTTATTACAAATGGAGGAACACAAAGATGATCAATATTGTTTTCAAGACAGAAACTCTTCTTGCAGAAAGGCTTTGCTATCGACATCTATCTACACAGCACTGTACATCTTCTGCTCATTGTTTTCAGCAGTTACAGTATTTTTGAACGTACTGGTGatcatctccatctctcacttcAAGCAGCTCCACACTCCAACCAACCTGctcatcctctctctggctgtgtcagATCTCCTGGTGGGAGCGATTGTGATACCAGTAACGACTGTAGCAATATTGGAATCATGCTGGGGATTTGGGAAATATTTCTGTGCTTTTCATTTCTATATGGCTTTTTTATGTACCTCTTTATCTCTGGGCAATTTGGTCTTGATATCTATTGACCGCTATGTTGCTGTGTGTGATCCCTTATTGTACCActctaaaataacaataacaagaatAATGTGTTGTATATCCATTACCTGGTTTTGTTGTATCATATACCAGGCTGTTGTTATAAAAATATGTATAAATGTACAGGTACCCAGTAGGTGTTTGAAAGAATGTTTTACTGTAGATGGGTCAATCTGGGGTAATATAATTGATATAGTAATTACAATGGTTGTCCCGTGCTCTATTATTATAACACTTTATATGAAAATCTTTGTGGTGGCCAGATCACAGGCCAGAAAGGTATTTTCAAAAGAGACCGCCAGTGTGTCTGGTGTTAAAACTGTACAGGCAAATAAGTCTGAGAGAAAAGCAGCAAAAACTCTAGCTATTGTTGTGTTCAACTATCTCATTTGTTGGATTCCAtctctatttattttattttttgtacaTATTTTTATTGACAATTTATTGTCATTGTTCATCAGTTTTCTGCCACTTGTTAATTCCTTAATTAATCCAATAATTTATGCTTTCTTTTATCCATGGTTCAAAGTGACAGCTAAACATATTTTAACTCTGAAGTTAAGGCGTTCATAGTTCCTATGTTTTTATTCCTAAATTTGACAAACAGGTTTGATATAGTGATGTTATACAATTGTTGTATTTGCTTCTTTCATGTAACACTACACTGACATTAGTTATCTCAGTGTTCTCGTCATAGATTCATGTGGTGTTGATACAGAATGATTTAGCTGGATTAGAATGGAATGACTTGGAGAAAGCATAAGCTTATtgtataagaatttgttcttaaactgacttgcctagttaagtgaaattattatttttttacaaaaattaTAATAGAGATTGAAGTAATTTTGGGTTGTATATTACAAATACCAAAGTCTGTGGTTGTTCCATGTTATTTAATGAAAGTCCATTTTGAGGATGTCATGGATCTTATTGTATGTTGTTTAACATCACCCTCTACTGGCTTAATTGGGACACAATACCTCCAACAATATGCATGATATCAGATAAAGTCCAAGTCTAACTCAATGGTGTATTGTGGAAATAGTTGATGGTAAAAATGAAAGATTATGCAAAtatgggtaacactt

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036959595.1 True 1551 mRNA 0.35 1 43667903 43669453

Neighbor

gene id symbol gene type direction distance location
LOC110502161 LOC106582431 coding downstream 55336 43611549 ~ 43612567 (-)
LOC110502160 LOC106576908 coding downstream 80160 43585959 ~ 43587743 (-)
LOC118943590 NA coding downstream 169511 43493285 ~ 43498392 (-)
LOC110502159 NA coding downstream 508242 43153787 ~ 43159661 (-)
LOC110501903 LOC106582442 coding downstream 566254 43099332 ~ 43101649 (-)
LOC118943591 LOC106582431 coding upstream 11216 43680669 ~ 43681964 (-)
LOC118943592 LOC106582431 coding upstream 20218 43689511 ~ 43692662 (-)
LOC110502134 LOC106582432 coding upstream 63033 43732486 ~ 43733669 (-)
LOC118943593 LOC106582432 coding upstream 98017 43767470 ~ 43768589 (-)
LOC118936360 LOC106582432 coding upstream 130123 43799576 ~ 43800754 (-)
G1814021 NA non-coding downstream 27675 43633497 ~ 43640228 (-)
G1814001 NA non-coding downstream 90065 43577242 ~ 43577838 (-)
G1813999 LOC106582448 non-coding downstream 94986 43570568 ~ 43572917 (-)
G1813938 NA non-coding downstream 118017 43546550 ~ 43549886 (-)
G1813984 NA non-coding downstream 124580 43542234 ~ 43543323 (-)
G1814092 NA non-coding upstream 193130 43862583 ~ 43862961 (-)
G1814114 NA non-coding upstream 240129 43909582 ~ 43944371 (-)
LOC118936581 NA non-coding upstream 346231 44014413 ~ 44018572 (-)
G1814187 NA non-coding upstream 380270 44049723 ~ 44050244 (-)
G1812404 NA other downstream 990143 42677257 ~ 42677760 (-)
LOC110502155 psd12 other downstream 1062883 42603998 ~ 42605768 (-)
G1812079 LOC106582433 other downstream 1278630 42386822 ~ 42389273 (-)
G1811042 NA other downstream 2062672 41604974 ~ 41605231 (-)
LOC110501886 rhg15 other downstream 2202256 41447899 ~ 41523764 (-)
LOC110502171 LOC106582464 other upstream 840954 44473683 ~ 44553607 (-)
G1814480 NA other upstream 1003994 44673447 ~ 44673888 (-)
G1815615 LOC106582489 other upstream 2169297 45838750 ~ 45840982 (-)
G1816841 NA other upstream 3556098 47225551 ~ 47226646 (-)
G1816929 NA other upstream 3731669 47400985 ~ 47402047 (-)

Expression


Co-expression Network