LOC110502160 (LOC106576908)


Basic Information

Item Value
gene id LOC110502160
gene name LOC106576908
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 43585959 ~ 43587743 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021580017.2
cggtatggtgcatgtgacaaatacaattttattttatttgagttaTCCTCTTTCCCTGTAAACTATAATTtgagtgaccaaaacatcacccATACTATATTTTCTCCATTAAAATGCTCAGTTgagaaaatgtacattttatctCATCTCTAACGATCAGTCAGGCTGAAGGACAGGCTAAGAGGGCACAGCAACATCCAATCCTGTCATACGTTACATCATGCTTTCACAACTGATTTGTTTATccaaccatttttttttattctgtgcatagtgtttgtgtgcttgtgtgtgtacgtgtgcagaGAGACTCCGGGAGGGGAGTGTCTGTCAGTCATTCAGGGATAAATAGAGAGGCAGTGCTCAGAGTTTGTCAGAAGGCTGAACTGACAGGGTCACACAGGACCAAGCAGGAGCAGGACCTCAGCATTTGACCCTTTATTACAAATGGAGGAACATGAAGATGTTCAATATTGTTTTCAAGACGGAAACTCTTCTTGCAGAAAGGCTTTGCTATCGACATCTATCTACATAACACTGTACATCTTCTTCTCATTGATTTCAGCAGTTACAATATTTTTGAACATACTGGTGatcatctccatctctcacttcAAGCAGCTCCACACTACAACCAACCTGctcatcctctctctggctgCGTCAGATCTCCTGGTGGGACTGATTGTGATACCAGTAACGACAGTAGCAACAATGGAATCATGCTGGGGATTTGGggaatatttctgtgtgtttcaaTTCTACATTGCTTTTTTATGTGCTTCTTTATCTCTGGGCAATTTGGTCTTGATATCTATTGACCGCTATGTTGCTGTGTGTGATCCCTTAATGTACCActctaaaataacaataacaagaatGATGTGTTGTATTTCCATTACCTGGTGTTGTTGTATCATATACCGTGCTGCTATTATAAAAAACTTAGTAAATGTACAGGTACCCAGTaggtgtttgaatgaatgttttacCGTTGAAGGGTTAATCTGGGTTAATATCGTTGACCTTGTAATTACAATGGTTGTCCCGTGCTCTATTATTATAACACTTTATTTGAAAATCTTTGTGGTGGCCAGATCACAGGCCAGAAAGGTGTTTTCAAAAGAGGCTGCCAGTGTCTCTGGTGTTAAAACTATACAGGCAAATAAGTCTGAGAGAAAAGCAGCAAAAACTCTATCTATTGTTGTTGTCAACTATCTCATTTGTTGGATTCCATCTCTAtttcttttcttctttttttcttttttaattgACAACTTGACAACATTGTTCATCAGTTTTCTGCCACTTGTTAACTCCTTAATTAATCCAATAATTTATGCTTTTTTTTATCCATGGTTCAAAGTGACAGCTAAACATATTTTAACTCTGAAGTTAAGGCGTTCATAAATTAGTTCCTATGTTTTTATTCCATAGTTTGAGAAACAGCTTTGATATAGTTATGTTATACAATTTGTTGTAATTGCTTCTTTCATGTAACAATACCCTTAATTTTGTTCtacaattgttataattatttatttcatgtaaCAATAAACTGACATTACTTATCTCAGTGTTGTCACAGATACATGTGGTATGTGGTGTTGATACAGAAGAATTTGTTTGGATTGGAGTGGAATGACTTCGAGAATGCATAAAAAGGCTTAAGCTTGTTTTATAAAATACATTGTAGTCATTTTGGGCAGTATATTCCAAATACCAAAGCCTGTTGTTGTATTCTAATAGTACATTTTGAGGACGTCATGAGTCATTCTATATCTT

Function

NR:

description
trace amine-associated receptor 13c-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021580017.2 True 1785 mRNA 0.36 1 43585959 43587743

Neighbor

gene id symbol gene type direction distance location
LOC118943590 NA coding downstream 87567 43493285 ~ 43498392 (-)
LOC110502159 NA coding downstream 426298 43153787 ~ 43159661 (-)
LOC110501903 LOC106582442 coding downstream 484310 43099332 ~ 43101649 (-)
LOC110502158 LOC100137092 coding downstream 518824 43059549 ~ 43067135 (-)
LOC110501902 LOC106582441 coding downstream 529485 43050404 ~ 43056474 (-)
LOC110502161 LOC106582431 coding upstream 23806 43611549 ~ 43612567 (-)
LOC118943640 LOC106582482 coding upstream 80160 43667903 ~ 43669453 (-)
LOC118943591 LOC106582431 coding upstream 92926 43680669 ~ 43681964 (-)
LOC118943592 LOC106582431 coding upstream 101928 43689511 ~ 43692662 (-)
LOC110502134 LOC106582432 coding upstream 144743 43732486 ~ 43733669 (-)
G1814001 NA non-coding downstream 8121 43577242 ~ 43577838 (-)
G1813999 LOC106582448 non-coding downstream 13042 43570568 ~ 43572917 (-)
G1813938 NA non-coding downstream 36073 43546550 ~ 43549886 (-)
G1813984 NA non-coding downstream 42636 43542234 ~ 43543323 (-)
G1813983 NA non-coding downstream 43948 43541707 ~ 43542011 (-)
G1814021 NA non-coding upstream 45754 43633497 ~ 43640228 (-)
G1814092 NA non-coding upstream 274840 43862583 ~ 43862961 (-)
G1814114 NA non-coding upstream 321839 43909582 ~ 43944371 (-)
LOC118936581 NA non-coding upstream 427941 44014413 ~ 44018572 (-)
G1812404 NA other downstream 908199 42677257 ~ 42677760 (-)
LOC110502155 psd12 other downstream 980939 42603998 ~ 42605768 (-)
G1812079 LOC106582433 other downstream 1196686 42386822 ~ 42389273 (-)
G1811042 NA other downstream 1980728 41604974 ~ 41605231 (-)
LOC110501886 rhg15 other downstream 2120312 41447899 ~ 41523764 (-)
LOC110502171 LOC106582464 other upstream 922664 44473683 ~ 44553607 (-)
G1814480 NA other upstream 1085704 44673447 ~ 44673888 (-)
G1815615 LOC106582489 other upstream 2251007 45838750 ~ 45840982 (-)
G1816841 NA other upstream 3637808 47225551 ~ 47226646 (-)
G1816929 NA other upstream 3813379 47400985 ~ 47402047 (-)

Expression


Co-expression Network