LOC118943591 (LOC106582431)


Basic Information

Item Value
gene id LOC118943591
gene name LOC106582431
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 43680669 ~ 43681964 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036959079.1
AGGTCAGGCTAGGTGGGCACAGCAACATTCAATCCTGTCATACATTACATCATGTTTTCACAAATGATTTGTTTATCCAACCGTTTCATTTGTGTCTTCACGTATGTACGTTTTGTtattggtggtggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcagagacaCTACAGGGAGGAGAGTATCTGTTTGTCACTTAGGGATAAATAGAGAGGCAGAGCTCAGAGTTTGTCAGAAGACTCACCTGACAGGGTCACACACAGGACCAAGCAGGAGCGGGACCTCAGCATTTTGACCCTTTATTACAAATGGAGAAGCATGAAGATATTCAATACTGTTTTCAAGACAGAAACTCTTCTTGCATAAAGGCTTTGCTATCGACATCTATCTACATAACACTGTACATCTTCTTCTCATTGATTTCAGCAGTAACAGTATTTTTGAACATACTGGTGatcatctccatctctcacttcAAGCAGCTCCACACTCCAACCAACCTGctcatcctctctctggctgtggcAGATCTCCTGGTGGGACTGATTGTGATACCAGTAGTGACTGTAGCAATTATGGAACCATGCTGGGGATTTGGggaatatttctgtgtgtttcaaTTCTACATCTCTTGTTTGTGTACTTCTTTATCTCTGGGCAATTTGGTCTTGATATCTATTGACCGCTATGTTGCTGTGTGTGATCCCTTATTGTACCACTCTAAAATAACAGTAACAAGAATTATGTGTTGTATATCCATTACCTGGTGTTATTGTATCATATACCGTGCTGCTATTATGAAAATCTCTGTGAAAGTACAAGCACCAAGTAGTTGTTTGAAAGAATGTTTTATTGTAGAAGGGTTAATCTGGGTTAATATCATTGACCTTCTATTTACAATGGTTGTCCCGTGCTCTATTATTATAACACTTTATATGAAAATCTTTGTGGTGGCCAGATCACAGGCCAGAAAGGTATTTACAAAAGAGGCTGCCAGTGTGTCTGGTGTTAAAACTGTACAAGCAAATAAGTCTGAGACAAAAGCAGCAAAAACTCTATCTATTGTTGTTTTCACCTATCTAAATTGTTGGAttccttttttctttttttatttagtCAATTTAGATTCATCATCACTTTTCTTTAGCTTTCTACCACTTTTTAACTCTTTTATCAATCCAATCATTTATGCTTTCTTTTATCCATGGTTCAAAGTGACAGCTAAACGTATTTTAACTCTGAAGTTAAGGCGATCATAG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036959079.1 True 1296 mRNA 0.39 1 43680669 43681964

Neighbor

gene id symbol gene type direction distance location
LOC118943640 LOC106582482 coding downstream 11216 43667903 ~ 43669453 (-)
LOC110502161 LOC106582431 coding downstream 68102 43611549 ~ 43612567 (-)
LOC110502160 LOC106576908 coding downstream 92926 43585959 ~ 43587743 (-)
LOC118943590 NA coding downstream 182277 43493285 ~ 43498392 (-)
LOC110502159 NA coding downstream 521008 43153787 ~ 43159661 (-)
LOC118943592 LOC106582431 coding upstream 7707 43689511 ~ 43692662 (-)
LOC110502134 LOC106582432 coding upstream 50522 43732486 ~ 43733669 (-)
LOC118943593 LOC106582432 coding upstream 85506 43767470 ~ 43768589 (-)
LOC118936360 LOC106582432 coding upstream 117612 43799576 ~ 43800754 (-)
LOC110502164 LOC106582432 coding upstream 204317 43886281 ~ 43887278 (-)
G1814021 NA non-coding downstream 40441 43633497 ~ 43640228 (-)
G1814001 NA non-coding downstream 102831 43577242 ~ 43577838 (-)
G1813999 LOC106582448 non-coding downstream 107752 43570568 ~ 43572917 (-)
G1813938 NA non-coding downstream 130783 43546550 ~ 43549886 (-)
G1813984 NA non-coding downstream 137346 43542234 ~ 43543323 (-)
G1814092 NA non-coding upstream 180619 43862583 ~ 43862961 (-)
G1814114 NA non-coding upstream 227618 43909582 ~ 43944371 (-)
LOC118936581 NA non-coding upstream 333720 44014413 ~ 44018572 (-)
G1814187 NA non-coding upstream 367759 44049723 ~ 44050244 (-)
G1812404 NA other downstream 1002909 42677257 ~ 42677760 (-)
LOC110502155 psd12 other downstream 1075649 42603998 ~ 42605768 (-)
G1812079 LOC106582433 other downstream 1291396 42386822 ~ 42389273 (-)
G1811042 NA other downstream 2075438 41604974 ~ 41605231 (-)
LOC110501886 rhg15 other downstream 2215022 41447899 ~ 41523764 (-)
LOC110502171 LOC106582464 other upstream 828443 44473683 ~ 44553607 (-)
G1814480 NA other upstream 991483 44673447 ~ 44673888 (-)
G1815615 LOC106582489 other upstream 2156786 45838750 ~ 45840982 (-)
G1816841 NA other upstream 3543587 47225551 ~ 47226646 (-)
G1816929 NA other upstream 3719158 47400985 ~ 47402047 (-)

Expression


Co-expression Network