LOC118943592 (LOC106582431)


Basic Information

Item Value
gene id LOC118943592
gene name LOC106582431
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 43689511 ~ 43692662 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036959080.1
gtgtgtgtgtgtgtgttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcagagacaCTACAGGGAGGAGAGTATCTGTTTGTCACTTAGGGATAAATAGAGAGGCAGAGCTCAGAGTTTGTCAGAAGACTCACCTGACAGGGTCACACACAGGACCAAGCAGGAGCGGGACCTCAGCATTTTGACCCTTTATTACAAATGGAGAAGCATGAAGATATTCAATACTGTTTTCAAGACAGAAACTCTTCTTGCATAAAGGCTTTGCTATCGACATCTATCTACATAACACTGTACATCTTCTTCTCATTGATTTCAGCAGTAACAGTATTTTTGAACATACTGGTGatcatctccatctctcacttcAAGCAGTTCCACACTCCAACCAACCTGctcatcctctctctggctgtggcAGATCTCCTGGTGGGACTGATTGTGATACCAGTAGTGACTGTAGCAATTATGGAACCATGCTGGGGATTTGGggaatatttctgtgtgtttcaaTTCTACATCTCTTGTTTGTGTACTTCTTTATCTCTGGGCAATTTGGTCTTGATATCTATTGACCGCTATGTTGCTGTGTGTGATCCCTTATTGTACCACTCTAAAATAACAGTAACAAGAATTATGTGTTGTATATCCATTACCTGGTGTTATTGTATCATATACCGTGCTGCTATTATGAAAATCTCTGTGAAAGTACAAGCACCAAGTAGTTGTTTGAAAGAATGTTTTATTGTAGAAGGGTTAATCTGGATTAATATCATTGACCTTCTATTTACAATGGTTGTCCCGTGCTCTATTATTATAACACTTTATATGAAAATCTTTGTGGTGGCCAGATCACAGGCCAGAAAGGTATTTTCAAAAGAGGCTGCCAGAGTGTCTGGTGTTAAAACTGTACAAGCAAATAAGTCTGAGACAAAAGCAGCAAAAACTCTATCTATTGTTGTTTTCACCTATCTAAATTGTTGGAttccttttttctttttttatttagtCAATTTAGATTCATCATCACTTTTCTTTAGCTTTCTACCACTTTTTAACTCTTTTATCAATCCAATCATTTATGCTTTCTTTTATCCATGGTTCAAAGTGACAGCTAAACATATTTTAACTCTGAAGTTAAGGCGTTCATAG
>TU2075305
taagagacagaTCATTTATGCTTTCTTTTATCCATGGTTCAAAGTGACAGCTAAACATATTTTAACTCTGAAGTTAAGGCGTTCATAGTTCCTATGTTTTTATGCCTAACTTTGACAAACATGTTTGATGTTGTGTTGTTATGCAATTGTTGTAATTGCTTATTTCACGTGTCAATACACTGACATTACTTATGTTATTGTTGTCATCATAGATAACATTCTGTTGATACAGAATGTTTGTCTGAATT

Function

NR:

description
trace amine-associated receptor 13c-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036959080.1 False 1168 mRNA 0.38 1 43689671 43690838
TU2075305 True 248 lncRNA 0.31 2 43689511 43692662

Neighbor

gene id symbol gene type direction distance location
LOC118943591 LOC106582431 coding downstream 7707 43680669 ~ 43681964 (-)
LOC118943640 LOC106582482 coding downstream 20218 43667903 ~ 43669453 (-)
LOC110502161 LOC106582431 coding downstream 77104 43611549 ~ 43612567 (-)
LOC110502160 LOC106576908 coding downstream 101928 43585959 ~ 43587743 (-)
LOC118943590 NA coding downstream 191279 43493285 ~ 43498392 (-)
LOC110502134 LOC106582432 coding upstream 41648 43732486 ~ 43733669 (-)
LOC118943593 LOC106582432 coding upstream 76632 43767470 ~ 43768589 (-)
LOC118936360 LOC106582432 coding upstream 108738 43799576 ~ 43800754 (-)
LOC110502164 LOC106582432 coding upstream 195443 43886281 ~ 43887278 (-)
LOC110502166 LOC106576908 coding upstream 262813 43953651 ~ 43955514 (-)
G1814021 NA non-coding downstream 49443 43633497 ~ 43640228 (-)
G1814001 NA non-coding downstream 111833 43577242 ~ 43577838 (-)
G1813999 LOC106582448 non-coding downstream 116754 43570568 ~ 43572917 (-)
G1813938 NA non-coding downstream 139785 43546550 ~ 43549886 (-)
G1813984 NA non-coding downstream 146348 43542234 ~ 43543323 (-)
G1814092 NA non-coding upstream 171745 43862583 ~ 43862961 (-)
G1814114 NA non-coding upstream 218744 43909582 ~ 43944371 (-)
LOC118936581 NA non-coding upstream 324846 44014413 ~ 44018572 (-)
G1814187 NA non-coding upstream 358885 44049723 ~ 44050244 (-)
G1814207 NA non-coding upstream 403546 44094384 ~ 44094911 (-)
G1812404 NA other downstream 1011911 42677257 ~ 42677760 (-)
LOC110502155 psd12 other downstream 1084651 42603998 ~ 42605768 (-)
G1812079 LOC106582433 other downstream 1300398 42386822 ~ 42389273 (-)
G1811042 NA other downstream 2084440 41604974 ~ 41605231 (-)
LOC110501886 rhg15 other downstream 2224024 41447899 ~ 41523764 (-)
LOC110502171 LOC106582464 other upstream 819569 44473683 ~ 44553607 (-)
G1814480 NA other upstream 982609 44673447 ~ 44673888 (-)
G1815615 LOC106582489 other upstream 2147912 45838750 ~ 45840982 (-)
G1816841 NA other upstream 3534713 47225551 ~ 47226646 (-)
G1816929 NA other upstream 3710284 47400985 ~ 47402047 (-)

Expression


Co-expression Network