XLOC_037146 (zgc:153901)


Basic Information

Item Value
gene id XLOC_037146
gene name zgc:153901
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 24208533 ~ 24212884 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073130
GAAATACACAGACACCGCGTGACACTGACATCTCTGTGCAAgaTGTCCTGCTCAGCTCTTGGTCGACGACTGGTTGCATGCCTTTTAAACATCTCTGAAGCCCGAAGAAAAGACTTGGTGGAGACAGTGGCCAGATCAGCCATCACTGACATAAAGGGAGAAAAACGTGAAGGTGTCACAGTGCTGAACATCTTCAATGATTCTGACTACAACCGCTCTGTCATTACTGTTGTTGCAAACATTGAGCTCATAAGGGAGGCTGTATTGTCAGCCtgtgagtgtgcatgttctctgATTGACATGAGTGTCCACGAGGGCATCCATCCATGCATGGGTGCAGTGGATCTGGTGCCTCTCTATCCACTGGGGGAGGATGTGGGACTCCAGGATTGTGGAGAAGAAGCCCAGGcATTGGCCTTGACTCTGGCAGAACGTGTAGCAGGCACCAGTGCCTTTTTGTTTGGCTGGGCAGATTCACCTCAGCATCGAGGTCTGGCTCAGAGGAGGAAGGAGATCGGCTGGTTCAGAAAGGTCTTGAATGTGTCAAACATCAAGCCTGACATTGGTTCTCAGCCCACAAGGAGATACGGCATTACAGgtgTTGGAGCGAGTCCCTACGTCATGAACTGTAATGTAACCATCGATACCCAGGATCTGGCCCTGGGCCGTAGTGTGGCTTCAGCAATCCGTGAATCCAGTCCTGGTGGCATCCCTGGAGTTCAGGTCATGGCCCTGCCACATGAAGGTGCCGTGGAGATCGCCTGCAATGTGGAGAGTGTTCATGGTAGTTCTTCATCTCATGGTGAGGAGCAGTGGCCAAACTTCAGCATTGGAGGGCAAACCTTCTGCCATGCTCCAGCCTCACTAAT
>TCONS_00073131
CGGACGTCGCTAGCGGAAACAGCTGTGAGCGTGTGCTAGGTTACTTTTGGAGACTAGTGCATGACAGgaTGTCCTGCTCAGCTCTTGGTCGACGACTGGTTGCATGCCTTTTAAACATCTCTGAAGCCCGAAGAAAAGACTTGGTGGAGACAGTGGCCAGATCAGCCATCACTGACATAAAGGcATTGGCCTTGACTCTGGCAGAACGTGTAGCAGGCACCAGTGCCTTTTTGTTTGGCTGGGCAGATTCACCTCAGCATCGAGGTCTGGCTCAGAGGAGGAAGGAGATCGGCTGGTTCAGAAAGGTCTTGAATGTGTCAAACATCAAGCCTGACATTGGTTCTCAGCCCACAAGGAGATACGGCATTACAGgtgTTGGAGCGAGTCCCTACGTCATGAACTGTAATGTAACCATCGATACCCAGGATCTGGCCCTGGGCCGTAGTGTGGCTTCAGCAATCCGTGAATCCAGTCCTGGTGGCATCCCTGGAGTTCAGGTCATGGCCCTGCCACATGAAGGTGCCGTGGAGATCGCCTGCAATGTGGAGAGTGTTCATGGTAGTTCTTCATCTCATGGTGAGGAGCAGTGGCCAAACTTCAGCATTGGAGGGCAAACCTTCTGCCATGCTCCAGCCTCACTAATCACTGCACGCGTAGCAGAATTGGTTAAACACCATGGAGTGGGTATCAAGGGTACAGCCCTGGTGGGCTTTACCCCACGCGAGTGCCGGAGACTGGCAGAAGGAGCCATCTCTAATGGAATTGGAGAGTTCTGGAAAGAGCTGAGGCGTGTGCACATGTGaaccagcaaaaaataaataaacttttaacacTCTGATCATGTGCAAAACAAtagcacatcatcatcatcatcgactAAAGCTGATAGAAAAATATTTCTGAGATCAATTATTAATCGGGTGTTTTTGAAGCTTTTAAATGAATAgcatcatcatcatttactcacccatgtGTCATTCCAGACCTTTATGACTTTTTCTGtggaagaaaaaaagacattttgaagaataatGGCACCAAATACCAGTTTTTGCATACCTCTGACTTCACATTCGACTCTATGGACTGTAATGTACTAAAAAtcttttgtgttttacaaaaTGTGGAACACTATGAGGGCCAGATCATAGTAAATGATCGTagtattcatttcatttttcacccaaactttaaaataacagaaaccaTGCATGCTGTTATACGATTAAAATGTTTGATCTTCAAATATAA
>TCONS_00073133
GTGAGCGTGTGCTAGGTTACTTTTGGAGACTAGTGCATGACAGGCGACCCTGAGCTGACTGAGTGTCTGGTTTTAGATCATATGGCCTGGGAGGtgtaaatgtttctgtttttttaaaaggaTGTCCTGCTCAGCTCTTGGTCGACGACTGGTTGCATGCCTTTTAAACATCTCTGAAGCCCGAAGAAAAGACTTGGTGGAGACAGTGGCCAGATCAGCCATCACTGACATAAAGGAATTCTTTTGGTTTGTTCTTGTGTCAAATGGTCCGGCTCCATCATTCATAAGGAGAAAAACGTGAAGGTGTCACAGTGCTGAACATCTTCAATGATTCTGACTACAACCGCTCTGTCATTACTGTTGTTGCAAACATTGAGCTCATAAGGGAGGCTGTATTGTCAGCCtgtgagtgtgcatgttctctgATTGACATGAGTGTCCACGAGGGCATCCATCCATGCATGGGTGCAGTGGATCTGGTGCCTCTCTATCCACTGGGGGAGGATGTGGGACTCCAGGATTGTGGAGAAGAAGCCCAGGcATTGGCCTTGACTCTGGCAGAACGTGTAGCAGGCACCAGTGCCTTTTTGTTTGGCTGGGCAGATTCACCTCAGCATCGAGGTCTGGCTCAGAGGAGGAAGGAGATCGGCTGGTTCAGAAAGGTCTTGAATGTGTCAAACATCAAGCCTGACATTGGTTCTCAGCCCACAAGGAGATACGGCATTACAGgtgTTGGAGCGAGTCCCTACGTCATGAACTGTAATGTAACCATCGATACCCAGGATCTGGCCCTGGGCCGTAGTGTGGCTTCAGCAATCCGTGAATCCAGTCCTGGTGGCATCCCTGGAGTTCAGGTCATGGCCCTGCCACATGAAGGTGCCGTGGAGATCGCCTGCAATGTGGAGAGTGTTCATGGTAGTTCTTCATCTCATGGTGAGGAGCAGTGGCCAAACTTCAGCATTGGAGGGCAAACCTTCTGCCATGCTCCAGCCTCACTAATCACTGCACGCGTAGCAGAATTGGTTAAACACCATGGAGTGGGTATCAAGGGTACAGCCCTGGTGGGCTTTACCCCACGCGAGTGCCGGAGACTGGCAGAAGGAGCCATCTCTAATGGAATTGGAGAGTTCTGGAAAGAGCTGAGGCGTGTGCACATGTGaaccagcaaaaaataaataaacttttaacacTCTGATCATGTGCAAAACAAtagcacatcatcatcatcatcgactAAAGCTGATAGAAAAATATTTCTGAGATCAATTATTAATCGGGTGTTTTTGAAGCTTTTAAATGAATAgcatcatcatcatttactcacccatgtGTCATTCCAGACCTTTATGACTTTTTCTGtggaagaaaaaaagacattttgaagaataatGGCACCAAATACCAGTTTTTGCATACCTCTGACTTCACATTCGACTCTATGGACTGTAATGTACTAAAAAtcttttgtgttttacaaaaTGTGGAACACTATGAGGGCCAGATCATAGTAAATGATCGTagtattcatttcatttttcacccaaactttaaaataacagaaaccaTGCATGCTGTTATACGATTAAAATGTTTGATCTTCAAATATAA
>TCONS_00073132
GTGAGCGTGTGCTAGGTTACTTTTGGAGACTAGTGCATGACAGGCGACCCTGAGCTGACTGAGTGTCTGGTTTTAGATCATATGGCCTGGGAGGtgtaaatgtttctgtttttttaaaaggaTGTCCTGCTCAGCTCTTGGTCGACGACTGGTTGCATGCCTTTTAAACATCTCTGAAGCCCGAAGAAAAGACTTGGTGGAGACAGTGGCCAGATCAGCCATCACTGACATAAAGGGAGAAAAACGTGAAGGTGTCACAGTGCTGAACATCTTCAATGATTCTGACTACAACCGCTCTGTCATTACTGTTGTTGCAAACATTGAGCTCATAAGGGAGGCTGTATTGTCAGCCtgtgagtgtgcatgttctctgATTGACATGAGTGTCCACGAGGGCATCCATCCATGCATGGGTGCAGTGGATCTGGTGCCTCTCTATCCACTGGGGGAGGATGTGGGACTCCAGGATTGTGGAGAAGAAGCCCAGGcATTGGCCTTGACTCTGGCAGAACGTGTAGCAGGCACCAGTGCCTTTTTGTTTGGCTGGGCAGATTCACCTCAGCATCGAGGTCTGGCTCAGAGGAGGAAGGAGATCGGCTGGTTCAGAAAGGTCTTGAATGTGTCAAACATCAAGCCTGACATTGGTTCTCAGCCCACAAGGAGATACGGCATTACAGgtgTTGGAGCGAGTCCCTACGTCATGAACTGTAATGTAACCATCGATACCCAGGATCTGGCCCTGGGCCGTAGTGTGGCTTCAGCAATCCGTGAATCCAGTCCTGGTGGCATCCCTGGAGTTCAGGTCATGGCCCTGCCACATGAAGGTGCCGTGGAGATCGCCTGCAATGTGGAGAGTGTTCATGGTAGTTCTTCATCTCATGGTGAGGAGCAGTGGCCAAACTTCAGCATTGGAGGGCAAACCTTCTGCCATGCTCCAGCCTCACTAATCACTGCACGCGTAGCAGAATTGGTTAAACACCATGGAGTGGGTATCAAGGGTACAGCCCTGGTGGGCTTTACCCCACGCGAGTGCCGGAGACTGGCAGAAGGAGCCATCTCTAATGGAATTGGAGAGTTCTGGAAAGAGCTGAGGCGTGTGCACATGTGaaccagcaaaaaataaataaacttttaacacTCTGATCATGTGCAAAACAAtagcacatcatcatcatcatcgactAAAGCTGATAGAAAAATATTTCTGAGATCAATTATTAATCGGGTGTTTTTGAAGCTTTTAAATGAATAgcatcatcatcatttactcacccatgtGTCATTCCAGACCTTTATGACTTTTTCTGtggaagaaaaaaagacattttgaagaataatGGCACCAAATACCAGTTTTTGCATACCTCTGACTTCACATTCGACTCTATGGACTGTAATGTACTAAAAAtcttttgtgttttacaaaaTGTGGAACACTATGAGGGCCAGATCATAGTAAATGATCGTagtattcatttcatttttcacccaaactttaaaataacagaaaccaTGCATGCTGTTATACGATTAAAATGTTTGATCTTCAAATATAA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000062423

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073130 False 869 mRNA 0.52 6 24208533 24212276
TCONS_00073131 False 1251 lncRNA 0.45 4 24209641 24212884
TCONS_00073133 False 1608 lncRNA 0.45 6 24209665 24212884
TCONS_00073132 True 1556 mRNA 0.46 6 24209665 24212884

Neighbor

gene id symbol gene type direction distance location
XLOC_037145 stk17b coding upstream 7374 24192370 ~ 24201159 (+)
XLOC_037144 hecw2a coding upstream 16388 24159280 ~ 24192145 (+)
XLOC_037143 pgap1 coding upstream 62819 24125445 ~ 24145714 (+)
XLOC_037142 maip1 coding upstream 84602 24121036 ~ 24123931 (+)
XLOC_037141 lrrfip1a coding upstream 92944 24065855 ~ 24115589 (+)
XLOC_037147 BX571803.2 coding downstream 171250 24384134 ~ 24387531 (+)
XLOC_037148 BX571803.4 coding downstream 210908 24423792 ~ 24427240 (+)
XLOC_037149 CT030712.1 coding downstream 495769 24708653 ~ 24710074 (+)
XLOC_037150 slc39a10 coding downstream 707793 24920677 ~ 24951662 (+)
XLOC_037151 BX323457.3 coding downstream 853777 25066661 ~ 25067730 (+)
XLOC_037136 NA non-coding upstream 321252 23884356 ~ 23887281 (+)
XLOC_037131 BX957274.1 non-coding upstream 508077 23696924 ~ 23700456 (+)
XLOC_037127 NA non-coding upstream 752188 23363848 ~ 23456345 (+)
XLOC_037128 CR392363.1 non-coding upstream 841324 23364242 ~ 23367209 (+)
XLOC_037126 NA non-coding upstream 874554 23321834 ~ 23333979 (+)
XLOC_037152 BX323457.2 non-coding downstream 860655 25073539 ~ 25074199 (+)
XLOC_037153 NA non-coding downstream 866279 25079163 ~ 25080305 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000009_08050911_08053397 NA coding CI01000009 null 8050421 ~ 8053500 (-)