XLOC_037153


Basic Information

Item Value
gene id XLOC_037153
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 25079163 ~ 25080305 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00075112
AGATGTGTAAAAAATGAATGTATGTGGTTTTATGTGTCTTTGGCAGCGAGAAGAGGCTGAATCCAAAGTCTGAGAAGAGGCTGAGAAACAGAGGATCGAACGAGAGAAACACTTCCAGAAGGAGGAGCTGGAAGACTTGGAAAGAAAGAAGGTAAAATAAAAGTCCACCaatcaagctaaacacagcatcatgctctcttattcacacacacacatacgcgtgCTCGGGAGTGATactgttagaccgcccgctccctTTTAAATTACACCAGTTATCGACCGCTCCcatgctttattcggaaatttattcccacgctGCACGAAATCTGGTACAGCCGccggaatgcagacctctaatctggcatcacggtggctcagtggttagcaatgtcgcctcaaagcaagaagatcgctagttcgagtcccggctgggtcagttggcatttctgtgtggagtttgcatgttcttagtgtgtgtgaatgagtgtctatgcaTGTTTCCCATTATtgctttgcagctggaagggcatccactgtgtaaaacatatgctggataagttggcggttcattctgttgtggtgacctctgattaataaagggactaaactgaagtaaaatgaatgaatgaattttgaaaaattgttaaatatagcacttgggaaatatttttaaatgatttaaaattcacagaagggcgcaAAAGTTTGTCTTCAATTGTATTTGAGATTTTAGTTCAGTACTGTTGGTTTAAcgcttgtttttaaatttttagcgTCTGGAAGAAATCATGAAGAGGACTCGTAAGAGTGACGCTGGAGCACaggtgagatgtgtgtgtgtgtgtgtgtttcattaagCCTAAATTTATCTTAAACACACTCAATGAAAGAAAATTAACCTGGTTTATTCATTTCTTTGCAGAAAGATGTTAAAACTCCAACTCAGGTGAATGGCAGAGTCACTGACAGC
>TCONS_00073141
CGAGAAGAGGCTGAATCCAAAGTCTGAGAAGAGGCTGAGAAACAGAGGATCGAACGAGAGAAACACTTCCAGAAGGAGGAGCTGGAAGACTTGGAAAGAAAGAAGcgTCTGGAAGAAATCATGAAGAGGACTCGTAAGAGTGACGCTGGAGCACagAAAGATGTTAAAACTCCAACTCAGGTGAATGGCAGAGTCACTGACAGCATAATACAGAAAAATCCGTCAGAAGCTCTTCATAGTGGTGCGACAAACCAATCACCAATGA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko03070 Bacterial secretion system
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000092490

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00075112 False 970 lncRNA 0.41 1 25079163 25080132
TCONS_00073141 True 265 processed_transcript 0.46 4 25079209 25080305

Neighbor

gene id symbol gene type direction distance location
XLOC_037152 BX323457.2 coding upstream 4964 25073539 ~ 25074199 (+)
XLOC_037151 BX323457.3 coding upstream 11433 25066661 ~ 25067730 (+)
XLOC_037150 slc39a10 coding upstream 127501 24920677 ~ 24951662 (+)
XLOC_037149 CT030712.1 coding upstream 369089 24708653 ~ 24710074 (+)
XLOC_037148 BX571803.4 coding upstream 651923 24423792 ~ 24427240 (+)
XLOC_037154 lrch1 coding downstream 16195 25096500 ~ 25171412 (+)
XLOC_037155 itm2bb coding downstream 250600 25330905 ~ 25346583 (+)
XLOC_037156 NA coding downstream 485435 25565740 ~ 25837749 (+)
XLOC_037157 gtdc1 coding downstream 760415 25840720 ~ 25913984 (+)
XLOC_037158 CR925716.1 coding downstream 776308 25856613 ~ 25856729 (+)
XLOC_037147 BX571803.2 non-coding upstream 691632 24384134 ~ 24387531 (+)
XLOC_037136 NA non-coding upstream 1191882 23884356 ~ 23887281 (+)
XLOC_037159 NA non-coding downstream 948426 26028731 ~ 26032109 (+)
XLOC_037162 NA non-coding downstream 1104783 26185088 ~ 26191424 (+)
XLOC_037164 NA non-coding downstream 1490924 26571229 ~ 26574876 (+)

Expression


Co-expression Network