RNA id: TCONS_00075112


Basic Information

Item Value
RNA id TCONS_00075112
length 970
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id XLOC_037153
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 25079163 ~ 25080305 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGATGTGTAAAAAATGAATGTATGTGGTTTTATGTGTCTTTGGCAGCGAGAAGAGGCTGAATCCAAAGTCTGAGAAGAGGCTGAGAAACAGAGGATCGAACGAGAGAAACACTTCCAGAAGGAGGAGCTGGAAGACTTGGAAAGAAAGAAGGTAAAATAAAAGTCCACCaatcaagctaaacacagcatcatgctctcttattcacacacacacatacgcgtgCTCGGGAGTGATactgttagaccgcccgctccctTTTAAATTACACCAGTTATCGACCGCTCCcatgctttattcggaaatttattcccacgctGCACGAAATCTGGTACAGCCGccggaatgcagacctctaatctggcatcacggtggctcagtggttagcaatgtcgcctcaaagcaagaagatcgctagttcgagtcccggctgggtcagttggcatttctgtgtggagtttgcatgttcttagtgtgtgtgaatgagtgtctatgcaTGTTTCCCATTATtgctttgcagctggaagggcatccactgtgtaaaacatatgctggataagttggcggttcattctgttgtggtgacctctgattaataaagggactaaactgaagtaaaatgaatgaatgaattttgaaaaattgttaaatatagcacttgggaaatatttttaaatgatttaaaattcacagaagggcgcaAAAGTTTGTCTTCAATTGTATTTGAGATTTTAGTTCAGTACTGTTGGTTTAAcgcttgtttttaaatttttagcgTCTGGAAGAAATCATGAAGAGGACTCGTAAGAGTGACGCTGGAGCACaggtgagatgtgtgtgtgtgtgtgtgtttcattaagCCTAAATTTATCTTAAACACACTCAATGAAAGAAAATTAACCTGGTTTATTCATTTCTTTGCAGAAAGATGTTAAAACTCCAACTCAGGTGAATGGCAGAGTCACTGACAGC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko03070 Bacterial secretion system
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00073131 lncRNA upstream 866279 24209641 ~ 24212884 (+) False XLOC_037146
TCONS_00073133 lncRNA upstream 866279 24209665 ~ 24212884 (+) False XLOC_037146
TCONS_00073129 lncRNA upstream 881304 24193039 ~ 24197859 (+) True XLOC_037145
TCONS_00073122 lncRNA upstream 956048 24121106 ~ 24123115 (+) True XLOC_037142
TCONS_00073116 lncRNA upstream 990475 24066237 ~ 24088688 (+) False XLOC_037141
TCONS_00075113 lncRNA downstream 485608 25565740 ~ 25599002 (+) False XLOC_037156
TCONS_00073147 lncRNA downstream 487443 25567575 ~ 25642154 (+) False XLOC_037156
TCONS_00075114 lncRNA downstream 487443 25567575 ~ 25710183 (+) False XLOC_037156
TCONS_00075115 lncRNA downstream 487467 25567599 ~ 25749947 (+) False XLOC_037156
TCONS_00075116 lncRNA downstream 487468 25567600 ~ 25730323 (+) False XLOC_037156
TCONS_00073138 mRNA upstream 127501 24936496 ~ 24951662 (+) True XLOC_037150
TCONS_00073137 mRNA upstream 128039 24920677 ~ 24951124 (+) False XLOC_037150
TCONS_00073136 mRNA upstream 369089 24708653 ~ 24710074 (+) True XLOC_037149
TCONS_00073132 mRNA upstream 866279 24209665 ~ 24212884 (+) True XLOC_037146
TCONS_00073130 mRNA upstream 866887 24208533 ~ 24212276 (+) False XLOC_037146
TCONS_00073142 mRNA downstream 16368 25096500 ~ 25167102 (+) False XLOC_037154
TCONS_00073144 mRNA downstream 16504 25096636 ~ 25171412 (+) False XLOC_037154
TCONS_00073143 mRNA downstream 16504 25096636 ~ 25171412 (+) True XLOC_037154
TCONS_00073145 mRNA downstream 250773 25330905 ~ 25346583 (+) False XLOC_037155
TCONS_00073148 mRNA downstream 488707 25568839 ~ 25836209 (+) False XLOC_037156
TCONS_00073140 other upstream 4964 25073539 ~ 25074199 (+) True XLOC_037152
TCONS_00073139 other upstream 11433 25066661 ~ 25067730 (+) True XLOC_037151
TCONS_00073135 other upstream 651923 24423792 ~ 24427240 (+) True XLOC_037148
TCONS_00073134 other upstream 691632 24384134 ~ 24387531 (+) True XLOC_037147
TCONS_00073118 other upstream 976872 24090907 ~ 24102291 (+) False XLOC_037141
TCONS_00073146 other downstream 250839 25330971 ~ 25337727 (+) True XLOC_037155
TCONS_00073158 other downstream 776481 25856613 ~ 25856729 (+) True XLOC_037158
TCONS_00073164 other downstream 1119492 26199624 ~ 26293589 (+) False XLOC_037163
TCONS_00073165 other downstream 1119492 26199624 ~ 26411378 (+) False XLOC_037163
TCONS_00073166 other downstream 1119527 26199659 ~ 26504452 (+) False XLOC_037163

Expression Profile

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