RNA id: TCONS_00073145


Basic Information

Item Value
RNA id TCONS_00073145
length 1505
RNA type mRNA
GC content 0.40
exon number 6
gene id XLOC_037155
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 25330905 ~ 25346583 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

acacacaaacattgctGCTGATCAGGAAACTGAACACTTTCATTTTGCGAACTCTCTGCTCTCTGTCGCACTTCTCAcggaaaaaaaacaacttactTTTCAGAATGGTAAAAGTTTCTTTTAACAAGGCTTTCGCCCTAAAGGATCCAAAAAAGGAAACTCTCATTAACGAAGAACAGGACCCAGAGGCAGTGGTGCTGGTGCGTCATCAGTCTCGGGTGTGGTGCTGGTGCTTCTGTCTGGGATTGACTCTTGTGCTTTCTGGCGTTGTGGTGGCAGGAGCCTATCTGTATAGGTACTATGTGTTAGAGAGGGACCAGGTGTTTATCTGTGGGCTGAAGTACTACGAGGAAGACTATGAGCTGAATGAAGAGGTGGACCCAGAAATTGGAGCACCGCTGAGGCTGATTGAGGAGAATGTCAGCTTTTTTGAAGATGATGAGGTGGAGCTCATCAGTGTACCAGTGCCAGAGTTCAAAGACAGCGATCCAGCTGGCATCCTGCACGACTTCACCATGAAACTGACTGCTTATCTCGACCTGAATCTGGACAAATGCTACATCATCACTCTCAACACCTCAGTTGTAATGCCACCAAGAGACTTTCAGGAGTTCCTGGTCAACATCAAGgaAGGAATGTATCTTCCTCAGACATACCTGATCCATGAGGAGATGATGGTGACAGAGAAGCTGGACGACACCAGTGATCTGGGCTATTACATCAATAACCTGTGCAAAGACAAAGACACGTACAGACTGCAGCGCAGAGACACCATTCTGGGTATGCAGAAGCGCGAGGCTCTGAACTGCCACAAGATCCGCCATTTTGAAAACAAGTTTGTTGTGGAGACTTTGATCTGCGAGCCATGAAGAGCACATGAGCATCTCTGACAACAACAGCAGATCTACAACACCAAATTAACGCAGTCGAACGCTTTCCTTCTGTAGCTGTTTATTTTCAAGCTTTCttcttctgtgtggagtttgtttatTCTTATCTGAAATGTGAATGTTTTCTAGATACAGGTGTattatgttttgtgtttgtatatgtttgtttttttcttaagcTATTTGTGTGAATTTCAGATTAACGAAAGAGTTATTTTGTGCACAAGAACAAAAAGGGATTAGCAATAACTACTTTTGGCTTAACTACAAATCAGATCAGCGTTTAGAAAgtgatttaataattcatttattcccaTGAGCTGCTGAAATGGATCAATTAATTTGCTTAATGAATAGTGActgctgttttagtttttttactatTTGAAATTAGAATACAGAGTGAAGAAGCATCGTCATCACTGTCTCTCAGCTGTGAATCTGCAAATTAGAAATGCTCAATTTTACACAAATATTACAAGTGAAATCTCCTTTAGTTCTTGGctgatttgtatttaataaactgTCTGTAAGATCCTCCATTTTACACATCTTCAGTTTTTCTGTTTTCAGATACAAGCTCCTTAAAtctaataaaactaaaatttaacaaaa

Function

GO:

id name namespace
GO:0042985 negative regulation of amyloid precursor protein biosynthetic process biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0001540 amyloid-beta binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2139 Predicted to enable amyloid-beta binding activity. Predicted to be involved in negative regulation of amyloid precursor protein biosynthetic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus and plasma membrane. Is expressed in blood; macrophage; pronephric duct; ventral mesenchyme; and yolk syncytial layer. Human ortholog(s) of this gene implicated in ITM2B-related cerebral amyloid angiopathy 1 and ITM2B-related cerebral amyloid angiopathy 2. Orthologous to human ITM2B (integral membrane protein 2B).

Ensembl:

ensembl_id ENSDART00000101470

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075112 lncRNA upstream 250773 25079163 ~ 25080132 (+) False XLOC_037153
TCONS_00073131 lncRNA upstream 1118021 24209641 ~ 24212884 (+) False XLOC_037146
TCONS_00073133 lncRNA upstream 1118021 24209665 ~ 24212884 (+) False XLOC_037146
TCONS_00073129 lncRNA upstream 1133046 24193039 ~ 24197859 (+) True XLOC_037145
TCONS_00073122 lncRNA upstream 1207790 24121106 ~ 24123115 (+) True XLOC_037142
TCONS_00075113 lncRNA downstream 219157 25565740 ~ 25599002 (+) False XLOC_037156
TCONS_00073147 lncRNA downstream 220992 25567575 ~ 25642154 (+) False XLOC_037156
TCONS_00075114 lncRNA downstream 220992 25567575 ~ 25710183 (+) False XLOC_037156
TCONS_00075115 lncRNA downstream 221016 25567599 ~ 25749947 (+) False XLOC_037156
TCONS_00075116 lncRNA downstream 221017 25567600 ~ 25730323 (+) False XLOC_037156
TCONS_00073144 mRNA upstream 159493 25096636 ~ 25171412 (+) False XLOC_037154
TCONS_00073143 mRNA upstream 159493 25096636 ~ 25171412 (+) True XLOC_037154
TCONS_00073142 mRNA upstream 163803 25096500 ~ 25167102 (+) False XLOC_037154
TCONS_00073138 mRNA upstream 379243 24936496 ~ 24951662 (+) True XLOC_037150
TCONS_00073137 mRNA upstream 379781 24920677 ~ 24951124 (+) False XLOC_037150
TCONS_00073148 mRNA downstream 222256 25568839 ~ 25836209 (+) False XLOC_037156
TCONS_00073150 mRNA downstream 429233 25775816 ~ 25836475 (+) False XLOC_037156
TCONS_00073151 mRNA downstream 429250 25775833 ~ 25837749 (+) False XLOC_037156
TCONS_00073152 mRNA downstream 429611 25776194 ~ 25821212 (+) False XLOC_037156
TCONS_00073153 mRNA downstream 430388 25776971 ~ 25827879 (+) False XLOC_037156
TCONS_00073141 other upstream 250600 25079209 ~ 25080305 (+) True XLOC_037153
TCONS_00073140 other upstream 256706 25073539 ~ 25074199 (+) True XLOC_037152
TCONS_00073139 other upstream 263175 25066661 ~ 25067730 (+) True XLOC_037151
TCONS_00073135 other upstream 903665 24423792 ~ 24427240 (+) True XLOC_037148
TCONS_00073134 other upstream 943374 24384134 ~ 24387531 (+) True XLOC_037147
TCONS_00073158 other downstream 510030 25856613 ~ 25856729 (+) True XLOC_037158
TCONS_00073164 other downstream 853041 26199624 ~ 26293589 (+) False XLOC_037163
TCONS_00073165 other downstream 853041 26199624 ~ 26411378 (+) False XLOC_037163
TCONS_00073166 other downstream 853076 26199659 ~ 26504452 (+) False XLOC_037163
TCONS_00073169 other downstream 1348286 26694869 ~ 26697305 (+) True XLOC_037166

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000009_07383927_07391805.mRNA True 1338 mRNA 0.44 7 CI01000009 7383654 ~ 7391994 (-)