RNA id: TCONS_00073142


Basic Information

Item Value
RNA id TCONS_00073142
length 2108
RNA type mRNA
GC content 0.49
exon number 19
gene id XLOC_037154
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 25096500 ~ 25171412 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGCAGACGCGTCATAATGGACAGCCAGAAAGCGCACTAGGAGGAAATTCACCTACAGCTTTAGAGAGCAGAGCATTTTCAGCGGGATTTACAGATAGTAGAGTTTTTCGACGAGCTTTTTCCCCGACGGGGCGAATATGGCGACGCTGGGACCGGAGCCCCGTCCTCTTTCCCAGCTGCCTTCTGCCGCATTACAGACGAACCTGAGCGGACTGGGCTCCAGCACGAACCTGCCCCTCAACCGAGGCTTGGAGAGAGCGTTGGAGGATGCGGCGAACTCTGGATTTCTGAACCTCAGTACAAGGAAACTGAAAGAATTCCCTCGGACTGCATCAAATTATGACCTGACGGATACGGTTGAAGCAGATCTGTCGAAGAATCGCTTAATTGACGTCCCATCAGAGGTGTGTCATCTGGTTTCCCTGGAAACGCTGAACCTTTATCACAACTGCATAAAAAGCATTCCTGACACCATCATCAGCCTTCAGTCGCTCACCTGCTTAAACATCAGCCGGAACCAGCTGTCAGTGCTGCCAGCTTGTGTGTGTGGTCTTCCTCTGCGAGTGCTCAACGCCAGCAATAACAAACTCAACGCACTTCCAGAAAGCATTGGCCAGCTCACCAATCTCATGGAGCTGGATGTCAGCTGCAATGAAATCACAGCTCTTCCACGCCAAATTGTCCAGCTCAAATCATTGAGGGAACTCAATGTGCACCGCAACCTTCTCTGTGTCCTACCAGAGGatTTGGCAGATCTACCTCTGGTCAAGTTTGATTTCTGCTGTAATAAAGTTTCTACTATTCCTGTCTGCTATCGAAAAATGACCCAGCTCCAATCCCTACAGCTGGAGAACAATCCACTTCAGAGTCCTCCTGCACAGATCTGTATGAAGGGCAAGATTCATATATTCAAATACCTCGCCATGGAGGCGTGCCGGAGTGACAAGATGGCTGATGCTCTGTACCTTCCTGTCACTGACCGCCTCAGCTTGACACGACCCAGCAATGGGAGCACTGAGGACATCGATCAGCACAAGAAACTTGACAGTGACTCTGGAGTGGGAAGTGACAATGGAGACAAACGACTTTCTGCTACAGAGCCATCCGATGAAGACAGTCTCAGCTTGAATGTGCCCATGACCAACATCACAGAGGAGGAGGGATTGAGTAAAGACGACTCTAGTGAACACATCAGCGGCCTGACAGGAGACAGAAGTTCTTCTGAATCTCTGAAGGATCACCTGAGTTATCGAGATTCTGCCCTTAGTTCACCATTCGTAAACTATATTAAAggTCGAGGTGCTGACTTCGACGAGCCCCTCAGGATAGAGGAAGACACTAATTGGGTTTCAGAACAAACGGCAAAAGTCAATATGATCAATCAGCTAAAGGAAGCTGTGGAGATGCTACAGGATCCTAACAGGGTTAACATGAACTCTGCTGATCTGTCTGGTATTAAACTCTACCCTGTGGAAATGGTTGCAGTAGACGACTCACTCAATGGTCAAGAGAGTGATGAGGGTCAGGCGACACCCAAGGGTGACGTGATTGGCCAGGAAGGAGCAGGCGATAGTTGTGAAAACCAAATTACCATGAATGAAGAAAAAACTCCAGTTTCCAGCCCCACACTGAACTCACCTCCCTTTGGCCTGAAGCCTCGATCAGTGTTTTTCAGGACGCACAAGACTCTGGAATCTGTGGATCCTCAGTTCACCATGAGGAGAAAGATGGAGCAGCTAAGAGAAGAGCTGGAGCTCACAGAGCAACTTCGAGAGAGTATTGAGAGCAGACTGAAAGTGGTTCTTCCTGAGGATCTGGGATGCTCTCTCAGTGACGGGGTCGTGCTTTGTCACCTAGTCAATCACATTCGGCCGCGATCAGTTGGCAGTATTCATGTACCATCACCTGCAGTGCCCAAGCTTAGCATGGCTAAATGTCGCAGAAACGTTGAAAATTTCTTGGATGCCTGCAGAAAAATGGGAGTCCCTGagGATAAGTTATGCCTGCCGCATCATATCCTGGAGGAGAAGGGACTGATCAAAGTTGGCATCACTGTCCAAGCTTTGCTGGATGAGACGTCCATCAACCAGACACTCTTCACatgagcat

Function

GO:

id name namespace
GO:2000405 negative regulation of T cell migration biological_process
GO:1990869 cellular response to chemokine biological_process
GO:0005737 cytoplasm cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-1783 Predicted to be involved in cellular response to chemokine and negative regulation of T cell migration. Predicted to be active in cytoplasm. Orthologous to human LRCH1 (leucine rich repeats and calponin homology domain containing 1).

Ensembl:

ensembl_id ENSDART00000135074

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075112 lncRNA upstream 16368 25079163 ~ 25080132 (+) False XLOC_037153
TCONS_00073131 lncRNA upstream 883616 24209641 ~ 24212884 (+) False XLOC_037146
TCONS_00073133 lncRNA upstream 883616 24209665 ~ 24212884 (+) False XLOC_037146
TCONS_00073129 lncRNA upstream 898641 24193039 ~ 24197859 (+) True XLOC_037145
TCONS_00073122 lncRNA upstream 973385 24121106 ~ 24123115 (+) True XLOC_037142
TCONS_00075113 lncRNA downstream 398638 25565740 ~ 25599002 (+) False XLOC_037156
TCONS_00073147 lncRNA downstream 400473 25567575 ~ 25642154 (+) False XLOC_037156
TCONS_00075114 lncRNA downstream 400473 25567575 ~ 25710183 (+) False XLOC_037156
TCONS_00075115 lncRNA downstream 400497 25567599 ~ 25749947 (+) False XLOC_037156
TCONS_00075116 lncRNA downstream 400498 25567600 ~ 25730323 (+) False XLOC_037156
TCONS_00073138 mRNA upstream 144838 24936496 ~ 24951662 (+) True XLOC_037150
TCONS_00073137 mRNA upstream 145376 24920677 ~ 24951124 (+) False XLOC_037150
TCONS_00073136 mRNA upstream 386426 24708653 ~ 24710074 (+) True XLOC_037149
TCONS_00073132 mRNA upstream 883616 24209665 ~ 24212884 (+) True XLOC_037146
TCONS_00073130 mRNA upstream 884224 24208533 ~ 24212276 (+) False XLOC_037146
TCONS_00073145 mRNA downstream 163803 25330905 ~ 25346583 (+) False XLOC_037155
TCONS_00073148 mRNA downstream 401737 25568839 ~ 25836209 (+) False XLOC_037156
TCONS_00073150 mRNA downstream 608714 25775816 ~ 25836475 (+) False XLOC_037156
TCONS_00073151 mRNA downstream 608731 25775833 ~ 25837749 (+) False XLOC_037156
TCONS_00073152 mRNA downstream 609092 25776194 ~ 25821212 (+) False XLOC_037156
TCONS_00073141 other upstream 16195 25079209 ~ 25080305 (+) True XLOC_037153
TCONS_00073140 other upstream 22301 25073539 ~ 25074199 (+) True XLOC_037152
TCONS_00073139 other upstream 28770 25066661 ~ 25067730 (+) True XLOC_037151
TCONS_00073135 other upstream 669260 24423792 ~ 24427240 (+) True XLOC_037148
TCONS_00073134 other upstream 708969 24384134 ~ 24387531 (+) True XLOC_037147
TCONS_00073146 other downstream 163869 25330971 ~ 25337727 (+) True XLOC_037155
TCONS_00073158 other downstream 689511 25856613 ~ 25856729 (+) True XLOC_037158
TCONS_00073164 other downstream 1032522 26199624 ~ 26293589 (+) False XLOC_037163
TCONS_00073165 other downstream 1032522 26199624 ~ 26411378 (+) False XLOC_037163
TCONS_00073166 other downstream 1032557 26199659 ~ 26504452 (+) False XLOC_037163

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) TU175299 True 3676 TUCP 0.49 8 NC_053123.1 39265709 ~ 39321527 (+)