RNA id: TCONS_00073132


Basic Information

Item Value
RNA id TCONS_00073132
length 1556
RNA type mRNA
GC content 0.46
exon number 6
gene id XLOC_037146
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 24208533 ~ 24212884 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGAGCGTGTGCTAGGTTACTTTTGGAGACTAGTGCATGACAGGCGACCCTGAGCTGACTGAGTGTCTGGTTTTAGATCATATGGCCTGGGAGGtgtaaatgtttctgtttttttaaaaggaTGTCCTGCTCAGCTCTTGGTCGACGACTGGTTGCATGCCTTTTAAACATCTCTGAAGCCCGAAGAAAAGACTTGGTGGAGACAGTGGCCAGATCAGCCATCACTGACATAAAGGGAGAAAAACGTGAAGGTGTCACAGTGCTGAACATCTTCAATGATTCTGACTACAACCGCTCTGTCATTACTGTTGTTGCAAACATTGAGCTCATAAGGGAGGCTGTATTGTCAGCCtgtgagtgtgcatgttctctgATTGACATGAGTGTCCACGAGGGCATCCATCCATGCATGGGTGCAGTGGATCTGGTGCCTCTCTATCCACTGGGGGAGGATGTGGGACTCCAGGATTGTGGAGAAGAAGCCCAGGcATTGGCCTTGACTCTGGCAGAACGTGTAGCAGGCACCAGTGCCTTTTTGTTTGGCTGGGCAGATTCACCTCAGCATCGAGGTCTGGCTCAGAGGAGGAAGGAGATCGGCTGGTTCAGAAAGGTCTTGAATGTGTCAAACATCAAGCCTGACATTGGTTCTCAGCCCACAAGGAGATACGGCATTACAGgtgTTGGAGCGAGTCCCTACGTCATGAACTGTAATGTAACCATCGATACCCAGGATCTGGCCCTGGGCCGTAGTGTGGCTTCAGCAATCCGTGAATCCAGTCCTGGTGGCATCCCTGGAGTTCAGGTCATGGCCCTGCCACATGAAGGTGCCGTGGAGATCGCCTGCAATGTGGAGAGTGTTCATGGTAGTTCTTCATCTCATGGTGAGGAGCAGTGGCCAAACTTCAGCATTGGAGGGCAAACCTTCTGCCATGCTCCAGCCTCACTAATCACTGCACGCGTAGCAGAATTGGTTAAACACCATGGAGTGGGTATCAAGGGTACAGCCCTGGTGGGCTTTACCCCACGCGAGTGCCGGAGACTGGCAGAAGGAGCCATCTCTAATGGAATTGGAGAGTTCTGGAAAGAGCTGAGGCGTGTGCACATGTGaaccagcaaaaaataaataaacttttaacacTCTGATCATGTGCAAAACAAtagcacatcatcatcatcatcgactAAAGCTGATAGAAAAATATTTCTGAGATCAATTATTAATCGGGTGTTTTTGAAGCTTTTAAATGAATAgcatcatcatcatttactcacccatgtGTCATTCCAGACCTTTATGACTTTTTCTGtggaagaaaaaaagacattttgaagaataatGGCACCAAATACCAGTTTTTGCATACCTCTGACTTCACATTCGACTCTATGGACTGTAATGTACTAAAAAtcttttgtgttttacaaaaTGTGGAACACTATGAGGGCCAGATCATAGTAAATGATCGTagtattcatttcatttttcacccaaactttaaaataacagaaaccaTGCATGCTGTTATACGATTAAAATGTTTGATCTTCAAATATAA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000090280

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00073129 lncRNA upstream 11806 24193039 ~ 24197859 (+) True XLOC_037145
TCONS_00073122 lncRNA upstream 86550 24121106 ~ 24123115 (+) True XLOC_037142
TCONS_00073116 lncRNA upstream 120977 24066237 ~ 24088688 (+) False XLOC_037141
TCONS_00073107 lncRNA upstream 186296 24020513 ~ 24023369 (+) True XLOC_037139
TCONS_00073102 lncRNA upstream 305249 23895793 ~ 23904416 (+) True XLOC_037137
TCONS_00075112 lncRNA downstream 866279 25079163 ~ 25080132 (+) False XLOC_037153
TCONS_00075113 lncRNA downstream 1352856 25565740 ~ 25599002 (+) False XLOC_037156
TCONS_00073147 lncRNA downstream 1354691 25567575 ~ 25642154 (+) False XLOC_037156
TCONS_00075114 lncRNA downstream 1354691 25567575 ~ 25710183 (+) False XLOC_037156
TCONS_00075115 lncRNA downstream 1354715 25567599 ~ 25749947 (+) False XLOC_037156
TCONS_00073128 mRNA upstream 8506 24192370 ~ 24201159 (+) False XLOC_037145
TCONS_00073126 mRNA upstream 17520 24159280 ~ 24192145 (+) False XLOC_037144
TCONS_00073125 mRNA upstream 17520 24159280 ~ 24192145 (+) False XLOC_037144
TCONS_00073127 mRNA upstream 22433 24159725 ~ 24187232 (+) True XLOC_037144
TCONS_00073124 mRNA upstream 63951 24126223 ~ 24145714 (+) True XLOC_037143
TCONS_00073136 mRNA downstream 495769 24708653 ~ 24710074 (+) True XLOC_037149
TCONS_00073137 mRNA downstream 707793 24920677 ~ 24951124 (+) False XLOC_037150
TCONS_00073138 mRNA downstream 723612 24936496 ~ 24951662 (+) True XLOC_037150
TCONS_00073142 mRNA downstream 883616 25096500 ~ 25167102 (+) False XLOC_037154
TCONS_00073144 mRNA downstream 883752 25096636 ~ 25171412 (+) False XLOC_037154
TCONS_00073118 other upstream 107374 24090907 ~ 24102291 (+) False XLOC_037141
TCONS_00073100 other upstream 322928 23885643 ~ 23886737 (+) True XLOC_037136
TCONS_00073090 other upstream 509209 23696924 ~ 23700456 (+) True XLOC_037131
TCONS_00073088 other upstream 653688 23547645 ~ 23555977 (+) True XLOC_037129
TCONS_00073080 other upstream 842456 23364242 ~ 23367209 (+) False XLOC_037128
TCONS_00073134 other downstream 171250 24384134 ~ 24387531 (+) True XLOC_037147
TCONS_00073135 other downstream 210908 24423792 ~ 24427240 (+) True XLOC_037148
TCONS_00073139 other downstream 853777 25066661 ~ 25067730 (+) True XLOC_037151
TCONS_00073140 other downstream 860655 25073539 ~ 25074199 (+) True XLOC_037152
TCONS_00073141 other downstream 866325 25079209 ~ 25080305 (+) True XLOC_037153

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000009_08050911_08053397.mRNA True 1589 mRNA 0.45 5 CI01000009 8050421 ~ 8053500 (-)