RNA id: TCONS_00073124


Basic Information

Item Value
RNA id TCONS_00073124
length 2923
RNA type mRNA
GC content 0.51
exon number 26
gene id XLOC_037143
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 24125445 ~ 24145714 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGAGACTCGTTGTATACGCGTTTTTTGCCTTCGCTCTTGGGCTTCTGCTCGTGGGTTTGCGAGAATTATTATTTGGTTTTGAGGAGAACCGATGCAGCATGACATACATGTTCGAGTACCCAGAATATCGACGCGTGCAGCTCCCGAGGCGCGTTGCCCGCCAGTACCCATCATACGGCCTGTATCTGTATGGAGAGGGTGCTTATGCTCAGGAGACCAGAGGACTCAAGCTTACCGGAGCGCCTGTGCTCTTCTTGCCCGGGAATGCAGGCAGCTACAAGCAAGCTCGTTCACTGGGTTCAGTGGCGTTGCGGAAGGCTGAGAACCTTGAGAGACAGATTCATTTGAACGTCTTCACTATTGACTTCAATGAGGAGCTGGTGGCCCTGTACGGGGGCAGTTTGCGTAGACAGACTCAATTTCTGCATGAAAGCATTAAAGCCATCCTGCGCCTTTACAAGGACCGTCCAGACCCCCCCACAAGTGTAGTTCTGGTGGGTCATTCCATGGGTGGAGTGGTGGCAAGAGCTTTGTTCACACTGGCACGCTTTCACCCACGCCTGGTCAGCCTCATCATCACCCAGGCCTCGCCCCATCAGGCACCTGTCCTGTCTCTGGACCCCTACATTCTGGAGTTTTACTCCACCGTCAGGCAGGGCTGGAACAAAAGAGCCGAGGACCTCCGTAATGTAACCGTTCTCTCAGTTGGTGGAGGTAACCTGGACTTTCAGGTGCTTTCTGGCTTGACAGCACTATCCTGCCCCATTGATGATCTCAACAAGATTTCAGTTGTGGCGACTGCAGTTCCCCGAACCTGGCTTTCCACAGATCACATTTCCATTGTTTGGTGCAAGGAGCTGGTTCTGGCCACAGTTCGAGCATTCTTTGACCTCATAGAACCAGAAACTGGGCAGTTCACAGAAAGTCCAGAGGAGCGACTGTCAGTGCTGAACTATCACTTCTTCAGACACCCTGTGCTGCCACCTGGAGAAGTGCAGGGTGCTTCTGTGACATTCTCAGCTCCTCCTGAGGCATGGAAGGAGGTCAATACACTGCGTCTGTTCTACAGTGCCCCTAAGGAAGCTCAAGTTAAGTACTTTCTGTTTGGTCTCTCCAGTCGAAGGAAGGCCTACAGTCATTTCTACTGCCGCAGTAATAATATGGAAATGACCAGCTGGCTGTATGGCTGTACACAGATGAGTGGCTCCATGTGTGTTCAAGCAGTAGATCTGTCATCTGACACAGAGCTTCTTCCAGCCTACAAAACTGTGGCCGTGAAAATCAGCAAACTCATGTCTGTCTCTCATCTCATCATTGATGCCTCTAACCCAAGCGGAGCACAGTTTGTCGTGGAGTGTGAGCTGCAGAGAGAGGAGAGCTTGACTGTGTCAGTGCAGGTGCCTCATCTACTGTCTTTTGGTCTGACCGTCACTGATGTCAGCATTAACTCATCTGGGCTGCTTCATACATTACAGCTGCAAGACTTTCATCAGGTTTATCAGGCGTTCAGAATAACAATCATGAGTCACTGCAAAACCAATAAAGGTAACAGCGTCCTCTCTCAGGTATTCAGCATGATGATCTACAGACTGCCCAGCGTCTACAGAGTGAGCGTACCTTGGTTTCGTGAAGACTCCTTTGCAATGTCAAGTACTCCTTCGGTCTCTGAGATCTTCAGCATGCTTCACAGCAGCCGACCAGACAACACATCCAGTGCCATGCTGCAGCTCCACACTGCCCCCAACTGCCAGTACAAGGTGTCGATACGGACATCATTTCCTAAAGTGCTTGGGCAGATTCTGCGTTTCTGTGGTCCGCTTCTGCCCGTCTACTGTGCTTTAGCACTTCTCCTGATGATCAGAGTCCAGCTGAGCTCTGTCAGAAGATCAGGACGTCCTGTCGAATTGCAAGAGGCCATGAGTAAATCCTTAGAGATCCACAAACTGGAGCTGCCGGTCCTCTTGCTGATGCTGCTGCTCCGGCAAAGCTGGTTTCAGGATGTCTGGACATCTTTGGGCCTCCCTGGGGTGGATGCACTTCCTCTAAACACGGTGGAGGACCTGTCCCATGAAAAAGCTTCTGTGCAGGAATGGCCTCGTCTCGTGtctccactgctgtgtgtgttCGGTGCAGCCATTGCATTCTGGGGCAGCACAGTCCTCCGAATGTCTGTCTGCTTCCTGTCCTTTATTGTTGCTCCACTACACAGaccTTCAGTGTCACGGGACTGTGGTACATTTGGTCTCCACACTCAGATTGTCCTGATGGTGTCTCTGGGAGTGCTGGGCAGCTTGACATGTGGATCTCTGGCATTGATGCTCTGTTGTCTCCTCCATCTCTACAGGGTGCTGAGATTACAGATGACAGAGAGATCACTGAGCCACATGTTGAACCTgGCACCTCAGAAAGCTTCACACAACACGGAGAATGGTTTTAACGGCAATGATCATCACAGTAATGGCAAAGAGTGTAACGGCAGTGCTTTACTGTCAGAATCAGTACTTCAAGATGTCAGAGATGATCTGCAGCTCCACTTGAGTGTGTCCACAGTGCTGACTCTGACCATGATGCTCTGCGCCCCGTCCCTCATCCACTGGAAGCACAATCTCAGATATTGGCTTCATTTGGATCCggacccctgctggcctcacacTGTGCCCCTGCTCATCAGCTCTGTGATGCTCATCAACTGTAACACAAACTCACTCCTCCGCAGTAAACTGATGCTGAATCTGACTCTtcgtctgctgctgctgctgtgtgtgGGGCTGCTGGCTTTCTGTCCGCTGCACATTTACAGAGTCACACATTTCCTGTCTGCAGCTCTGAGCCTTCTGGTCTGTTCTTGTTACTTTTGACCTCCCAGAACACTTTAAACGTGAGTCTGCTTTGAGATTAGAGCAAGACTCAGGGCTGAGTAGA

Function

GO:

id name namespace
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport biological_process
GO:0015031 protein transport biological_process
GO:0006505 GPI anchor metabolic process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016787 hydrolase activity molecular_function
GO:0016788 hydrolase activity, acting on ester bonds molecular_function
GO:0050185 phosphatidylinositol deacylase activity molecular_function

KEGG:

id description
ko00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-090313-216 Predicted to enable phosphatidylinositol deacylase activity. Predicted to be involved in GPI anchor metabolic process and endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to act upstream of or within protein transport. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Orthologous to human PGAP1 (post-GPI attachment to proteins inositol deacylase 1).

Ensembl:

ensembl_id ENSDART00000132045

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00073122 lncRNA upstream 3108 24121106 ~ 24123115 (+) True XLOC_037142
TCONS_00073116 lncRNA upstream 37535 24066237 ~ 24088688 (+) False XLOC_037141
TCONS_00073107 lncRNA upstream 102854 24020513 ~ 24023369 (+) True XLOC_037139
TCONS_00073102 lncRNA upstream 221807 23895793 ~ 23904416 (+) True XLOC_037137
TCONS_00075111 lncRNA upstream 238942 23885081 ~ 23887281 (+) False XLOC_037136
TCONS_00073129 lncRNA downstream 47325 24193039 ~ 24197859 (+) True XLOC_037145
TCONS_00073131 lncRNA downstream 63927 24209641 ~ 24212884 (+) False XLOC_037146
TCONS_00073133 lncRNA downstream 63951 24209665 ~ 24212884 (+) False XLOC_037146
TCONS_00075112 lncRNA downstream 933449 25079163 ~ 25080132 (+) False XLOC_037153
TCONS_00075113 lncRNA downstream 1420026 25565740 ~ 25599002 (+) False XLOC_037156
TCONS_00073121 mRNA upstream 2292 24121036 ~ 24123931 (+) False XLOC_037142
TCONS_00073120 mRNA upstream 10634 24106469 ~ 24115589 (+) True XLOC_037141
TCONS_00073115 mRNA upstream 15284 24065932 ~ 24110939 (+) False XLOC_037141
TCONS_00073126 mRNA downstream 13566 24159280 ~ 24192145 (+) False XLOC_037144
TCONS_00073125 mRNA downstream 13566 24159280 ~ 24192145 (+) False XLOC_037144
TCONS_00073127 mRNA downstream 14011 24159725 ~ 24187232 (+) True XLOC_037144
TCONS_00073128 mRNA downstream 46656 24192370 ~ 24201159 (+) False XLOC_037145
TCONS_00073130 mRNA downstream 62819 24208533 ~ 24212276 (+) False XLOC_037146
TCONS_00073118 other upstream 23932 24090907 ~ 24102291 (+) False XLOC_037141
TCONS_00073100 other upstream 239486 23885643 ~ 23886737 (+) True XLOC_037136
TCONS_00073090 other upstream 425767 23696924 ~ 23700456 (+) True XLOC_037131
TCONS_00073088 other upstream 570246 23547645 ~ 23555977 (+) True XLOC_037129
TCONS_00073080 other upstream 759014 23364242 ~ 23367209 (+) False XLOC_037128
TCONS_00073134 other downstream 238420 24384134 ~ 24387531 (+) True XLOC_037147
TCONS_00073135 other downstream 278078 24423792 ~ 24427240 (+) True XLOC_037148
TCONS_00073139 other downstream 920947 25066661 ~ 25067730 (+) True XLOC_037151
TCONS_00073140 other downstream 927825 25073539 ~ 25074199 (+) True XLOC_037152
TCONS_00073141 other downstream 933495 25079209 ~ 25080305 (+) True XLOC_037153

Expression Profile

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