RNA id: TCONS_00075111


Basic Information

Item Value
RNA id TCONS_00075111
length 2201
lncRNA type read_through
GC content 0.35
exon number 1
gene id XLOC_037136
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 23884356 ~ 23887281 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCGAGTATTCAGGCACTTTTACACCATGAGACCGGCATTACGCGCACTCAGTCTGCGGAACGTGAACATTGAGATTGGTAAGGGGGGAAATATTTCGTTTTTCTCTTTAAGTATAGATAGACGAAAAAAGATAGGCTAACTGCCAAGAGGTTTGAATACTAAATGTGCCTTAAGTCTTTATATTTGAGTTTTTACAACTCTTTTGGTCAAAGACTTTGAAATTTtgaaatctgagggttaaaatatttaatgagaaAACCGCTTGTAAATTTTACCATGAAGTGCTTAGCAAAGCACCTTACTAATcgagttttttatatatatatattttttttgagagGGAATTCTGGTGAATGTCTTAAGAGAACATGatttttactttatattctaATGAAcgaaaataacttttaaaaatcatgATGCTACCAGTGCAACACAAGGCTGGTTTAGTGATTCTGGATCACTAATGTTTTAACCGTttctttattttgcaaaaaacattttacactATGAACATAAAGTATAGTATTAGCCTACTCATATGtgaaacaaattttaaaagaTTTCACGTGGAGCAGGTCGCCCCCTAATGGCCACAACATCATTCGACCAAATTCATCgaagctgagactgcatctcaGTGATGCAAATGTCACAATAACACTCATGGAATTggtggttcaatctgctgtggcgacgaCTGATAAACcatggggtaagatgaaggataGTGAGTGGGACTTGTCAAACAAGTAAATCTTATGTCAAATTTCTGTTGTCTAGATTTGGTCACATCACATGAACTGACCCCTTAGTTTCCTTTGGCTGGACTGGCGCCAGGGTGATTTTCCGCTGCTCTGCGTAAGTTTACACATACTTAACTTCAGCAAAATcatcatgtttacatgcctaaatattaagctgctgccatgtaattggtgGAATAGATTGTGTTAGAAAAGATGTACATGATTAATTTGCTGGTGAATGTGTTTTCTGATACATAAACTAGTTTCAAGCATTCAGGCTGCTCAGCATAAGTGTATTTCAGTGTATTGTGTACGTCATGCAGTTAAGCTTTGCTTAAATAAATGAAGCagaattaaacttgacaaaagattttattttactgGAAGGCAAAACGTCTTATTAAACATTAATAAGCAGCAACTGTATATTAACATACATCAATGAAAGATTCCTAACATATGCAACACACTGTCATTCAATCAACAAAAAAGTCTTTCAAACCTATTTACACTAATGCATCAGTTTATGAAAACAGGTGAAAAAAACACTCTTACTAAAACTGAAACTTTATGAAAGCCTGAAGGTTTTGGAAGTGAATTGGGATTCAGCTTGTCAGACTTTTTcattcataatattaaaaaagtaataaataagttTCTGAAGGTTTCTCTCCAGGTCTGATTCTAGTCAATGTATCCTTCTGGTTCCAGAAGAAGATACCGCTGCAGTGACTTTGGCACAGGAAGGTTGGGAATGATTGACCAGCAGTTCTTTCCAAACTGTTTTCTCAGAGCAGACCGACACAGATGCAGCAAACTACGTGGTTTATATTCCAGTGCAAAAAGAGACTCATAAAATGGTCTGTGAAgctaaaaaaagaatattaaaatgcaataaagtgtATGCATTAACTTGATTCAAAGTTGATTACTTTTAAGCTTAGCTTTATTTTATCACacaattacttatttatttcatcAATTGCTATTTTTGAGAAAATATGCAAAAAATTTCCGTCAAATGTTAAGAGACTCACATGGAAAGTATCCTCAGGTATGGCCTCAACCCATCTTGAGGTAACAGGAACAAGCGTGTATGAGTTAAACAGGATTTCCACTGTTTTAGGTGCCTCAGCACAGGCTGTTAGTACCTTAAGAAAAACAGcatcaaattaattattttttgtcaaCTGGTAAACTGCTAAGTAATTAGAATGGATCTAGGTGGCAGAAGTACAGTTCCGTTAATTTTCTCTGCAGGTTTTATAAACAATCAATGATAAACCTTTAAGATAAGATTTATTTTGAGCTCCAATGTTGTTATGTTTGCTTTTGTTGTATTTGTTTAATCTCCTTGCATTCATTCAGCTGTTGCAGCAAATAAGGAGAACTTTACTTTGTAGTCCTATGAATGACATAATTGATTTAGTGTCACTACACTTTCTGAATAGT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00073098 lncRNA upstream 75659 23808654 ~ 23809422 (+) True XLOC_037134
TCONS_00073086 lncRNA upstream 358829 23511983 ~ 23526252 (+) False XLOC_037129
TCONS_00075108 lncRNA upstream 465551 23416749 ~ 23419530 (+) True XLOC_037127
TCONS_00073083 lncRNA upstream 517872 23364611 ~ 23367209 (+) False XLOC_037128
TCONS_00073102 lncRNA downstream 8512 23895793 ~ 23904416 (+) True XLOC_037137
TCONS_00073107 lncRNA downstream 133232 24020513 ~ 24023369 (+) True XLOC_037139
TCONS_00073116 lncRNA downstream 178956 24066237 ~ 24088688 (+) False XLOC_037141
TCONS_00073122 lncRNA downstream 233825 24121106 ~ 24123115 (+) True XLOC_037142
TCONS_00073129 lncRNA downstream 305758 24193039 ~ 24197859 (+) True XLOC_037145
TCONS_00073099 mRNA upstream 43377 23825440 ~ 23841704 (+) True XLOC_037135
TCONS_00073097 mRNA upstream 72445 23808546 ~ 23812636 (+) False XLOC_037134
TCONS_00073095 mRNA upstream 105556 23770666 ~ 23779525 (+) False XLOC_037133
TCONS_00073096 mRNA upstream 105582 23772516 ~ 23779499 (+) True XLOC_037133
TCONS_00073094 mRNA upstream 105584 23765587 ~ 23779497 (+) False XLOC_037133
TCONS_00073101 mRNA downstream 8430 23895711 ~ 23906205 (+) False XLOC_037137
TCONS_00073103 mRNA downstream 13422 23900703 ~ 23902215 (+) True XLOC_037138
TCONS_00073104 mRNA downstream 121598 24008879 ~ 24021162 (+) False XLOC_037139
TCONS_00073105 mRNA downstream 121598 24008879 ~ 24023353 (+) False XLOC_037139
TCONS_00073106 mRNA downstream 121732 24009013 ~ 24023369 (+) False XLOC_037139
TCONS_00073090 other upstream 184625 23696924 ~ 23700456 (+) True XLOC_037131
TCONS_00073088 other upstream 329104 23547645 ~ 23555977 (+) True XLOC_037129
TCONS_00073080 other upstream 517872 23364242 ~ 23367209 (+) False XLOC_037128
TCONS_00073073 other upstream 838696 23046267 ~ 23046385 (+) True XLOC_037119
TCONS_00073071 other upstream 878103 23006451 ~ 23006978 (+) True XLOC_037117
TCONS_00073118 other downstream 203626 24090907 ~ 24102291 (+) False XLOC_037141
TCONS_00073134 other downstream 496853 24384134 ~ 24387531 (+) True XLOC_037147
TCONS_00073135 other downstream 536511 24423792 ~ 24427240 (+) True XLOC_037148
TCONS_00073139 other downstream 1179380 25066661 ~ 25067730 (+) True XLOC_037151
TCONS_00073140 other downstream 1186258 25073539 ~ 25074199 (+) True XLOC_037152

Expression Profile

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