RNA id: TCONS_00073094


Basic Information

Item Value
RNA id TCONS_00073094
length 5723
RNA type mRNA
GC content 0.41
exon number 17
gene id XLOC_037133
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 23765587 ~ 23779525 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACATGGATAATGCTGAGTTCCCGTACGCTCTCTGCGTGGAGGGCCAGTGGGACCCCCGTACTCCTAAACTAAAAAACAAGTTTATAATCTATTTCCAGAGTAAGAAATCCGACGGGGGCGATTGTGTGGTTGAATACAGCGTTTCTGATGGGCAAACAGCGACTGTTCGGTTCAAAACAGAGCAAGTGAGACGGCGAGTTGTTAATAAACAAACGCATGAACTCAAGATTGGTCAGAAAACTGTGAAAATCACTGTGAGTCTTCCGTCATCAGAGGCCTCAGATCCCCAGGAAGCAACGTCTTCAGTCAGCACAATCACGGCGGGTGAACCACTGAGGGAAGAAGAGAAGACGACTGAGTCATCTGAGGAAAATGAAGAAGACACAACTATAAGATCAGCTGTAATTGAAAACATTCAAAACAGTAATCAAGAGTTTCTGACAATTCTGGTTGAAAATGTGCTGAGAGGATCTTCAACTGAATCCAATGACTTCAGCATTGAAATAATACCAGAAAGCAACTGTGCTGTGGTGACATTTTCCAATAGAAAGGatACAGAGACTTTTATCATATCCTGTCAAAGCAATGCAATGATTAAGAAGAAAAACATGAAAGTGGGATTGCTTGAGAAGACTTGTAAAGTGAAAGCTGAAGGCCTACCTCCGAACACAAACTCTGACTACCTCATGCTCTACTTTGAGAAATTTGGAGAAATAGAGGACGATGGGGTAACAGTTGATACGGACGAGTCAGCAATAATTACTTTTGCAAATCCTGAAGATGTGCAAAAAGTCATCAAACTTTCACATCAGATTAAGAAACATCCGTTTAAAGTACTGCCATACAATGAAAAGCTACAAACAGCTCTATATGGCAAAGACAGACCCACCCTAAAACTACCAGAGGCATTTACGGAGAAGATGGACAGAAATGTATGGCACCACTTAAAGGAAAACCAAATATCTCTAGATTTAGTCAAGCAAGCAATGTCCTGTCATTTTTGTGTGATGGATTTTCAGTCGTCAGAAGTAAAGATCAGTCCTTTGCCATCTCTACTTCACCAAGGTGAGCAGACAAGAAAACTTATTCAGACATGGAGAGAAAATGCCCTCTCTGGGTTCACCATGTCAATGTCTAAGTTCAAATCCGTTGAGCTCCACATTCAGAAAGATGCATGGACAGATGTACAGCCTGAAATTTACGAAACAGTGGCAGAAGAGGCAGTCACACTAGTTCCCTATGCGGATGAAGGGACAATAGCTGTAGCCGGACTGAAAGAACAGGTGAACGACATTGAGAGAACTCTGAAAGAAACTGTCCAGAGAATCACCCAAAAAATCCAAAGAGAGAAGGGCAGCGAGTCAGATGAAATCAGCATGACTCCATCTATTTACAATCTTGTTCTCTGTGATGGACTGAAGCAAGAAACTAATGACAAATTTCCTGAAATGGACATAACATATCTTGTGCACAGCCAAAAGTTAACTCTTTATGGTCTAAAAGATGAGGTCCtggaaacaaaaaacaagatacTGGAGGCCGTTCTTCATTTGATTCGTAAACCAACTGAACTCAATCAGTCTGTTTTAGATTTTCTGCTGAAGAAGGATCTCGAGGAGATGAccaaagatttgttttttaacaaaggAGTCAATGTTGCTTTAGAAGCTGATGGACAGAGAGTTTTGCTCGTTGGGAAAACAGACAAGGACTTGAGTGTTGGAGAGAAGCAGCTGCAGACAGACCTGGGTCATCTGAGCTTCAATGTAGATGATCCTAGTGTTTTCAGAAGATCAGACTGGCAAGACCTTGTCTctaacataaaaaacaatttcAGAACTGTTGCTGTACAGACATGTGCTAACAAAGTTGTGGTTTCTGGCTTTGTAGACTCCATTAATGACGTTGAACAACAGTTATATGATTTTGTTCAGGAAAACTCTCACATGGAGAAAACTCTGAATGCTCATAAGACTGTTATCACATTCATAAAAGATCACAGAAAGCAAGACTGGTTTGAAGAGGTGAAAGGTAAAGTGAGTGTGGATTTCAAAAATGACAGCATCGTGATCAGTGGCCCAAAGCTTCATGTCTGTGACTGTGTGCCTTTGTTTGACAACTTGTGCACATCTGCCCATCACTGCACTATGAAAATAGTTAAACCAGGAGCAAAGAATTTTTTCAAAGAGAAAGAGCCTATGTGTGTTTCATATGCCAAGACAAATATGAATTGTTTGGTCCAGTTAATAAACGAGTCTGACCACCCACATGACACAGTTGAACCACGAAAAGTCAAATCTGTCTATCAATTTAAAACACGTGAGGGAATGGAGATTACTGTACACAAAGCTGACATGTGTTCATTTCAAGTGGATGCAGTGGTTGGTGCGTGTAAAGAAACCCTCCTACTGGATGGAGGATTAGCAAAGGCACTCTCTGATGCTGCTGGTCCTAAACTTCAGAAAGACTGTGACAAGCTTGTTAAAGGACGGAAATTCACAACAGGAGATGCAGTTCTCCTCGATGCAGGAGGGCGTCTGCATTGCAAACATGTCATTTTAGCAATAGGGCCACATTATAATTCTTCCAAACCTCAAGAATCTGAAAAGCTCTTGAAAAAAGCTGTCAAGAGGAGTCTGAATGTGGCAGATCAAGAAAGCTTCCAGTCCATAGCAATTCCGGCCATCAGTTCTGGTGTGTTTGGTTTCCCAATGGACCTTTGTGCATTCACCATTGTAAAAGCCATAAAGGAGTTCTGTGATTTTGTCGAAGGAGACATTGCATTGACGAAGATTCACTTAGTTGACAATAATGATAAGACAGTTCAAGCCTTAGAAGCTGCAGTGAAAAAAGTTTATGGTGTCAGTGACCAGAGCACAACTGGAAGCAGTTCAAGCAGCCAACAGCAAAACAAAGCAAGTGCTTCTCCAAGCCAACATCAGTTAACCACATTCTTTCAAGGAGCATCACAAACAGAAAGTTTTCAGACAAAAGAAGGTTTAACCATCACCCTAATGAAAGGAAATATTGAGGATACAACAATGGATGTTGTTGTGAACACTCTCAGCAGTGATCTAAAACTTAATGTTGGAGCTGTTTCAAATGCCCTTTTTAAAGCAGCTGGTCCACAGCTTCAGGATCTGCTCGATCAGCAAGCCACAGGCCCTGCAAGCAGTGGTGCAGTCTTTGAAACAGCAGGAGCAAACCTGAAGAATAAACTGGTGTTCCATGCTGTTGTACCACACTGGAATCAGGGACAAGGAAATGAGCAAAAGGTGCTGGAGAATGTGATGGATACATGTTTGTGTAAGGCAGAGCAGCGTCAGCAGAGCTCCATTGTATTCTCTGCTATTGGCACTGGAAACCTGGGATTTCCAAAGTCACTGGTAGTCAGTACAATGCTGGACTCAGTCTTCAAGTTTAGCACTAAAAGAAGTTCTAAACACATACAGGAAGTGGCATTTGTTCTTCACCCCAAAGATACACAAACCATCCAGGTGTTCACAGATGAGTTCAGCAAAAGGTTTTTGGGCCAGTCTGCCTCTGCAAGTAACTCCACACAACCCCAAAGTACAGGCCCCTTCTCAAAAGTCACAACAAAATCTGGCATTCATGAGACTACAGTGGGAGGAGTAACACTTCAGGTCCTGAATGGTGATATCACTACTGAACAAACAGATGTTATTGTGAACTCCACTACTAAGGAATTCACACTGAAAGCAGGTGTCTCGAAGGCTATTTTGGATAAGGCTGGTCCAAATGTTGAAGCAGAGTGCCAGCAACTTGGAGCCAAGACTGACAGTGGACTGATAATGACTCAAGCAGGaaatttacagtgtaaaaaaatcatCCACATTGCAGCACAGAGTAATGCTATTATGATCCAAAAACACGTTAGAAAGGCTCTGGAAATGTGTGCTAAGGAAAAGTTAACCTCCATTGCATTTCCAGCTATTGGTACAGgaCAAGCAGGTTTGTCTCCAGGTCAAGTAGCAGACTCCATGCTGGATGGTATGCTGGAGATGCTAAGAAAGACTCCCCAGTCCAGTCTCAAGTTGATCAGGTTAGTTGTGTTTCAGGCACACATGCTCCCTGAGTTCCTCAAAAGTATGCAGAATCGAGAAACTGGACCTGCCAAACAAGAGAAAGAGAGCACATGGTCAAAAATCAAAGCATTTGCAGCCACTGCTAAATCATACCTCACTGGATCTTGggagaaagaaataaaacaaCATGGTGGCAAAGACTTTGTCATTGATGGTGTGGAAGTTGATCCAGTCTTTTTTTCAATCTGTGGACCATCAAAAGCAGAAGTGGATCAAGCTAAGATTTTCTTAGAGGACATGATCACTAAAGAACAAGTGTTCCAGTCTATCACAGACACAGCCATACTTTCCTTATCAGATAAAGATCAACAGCGAATCCTGGACCTGCAAAGCACCATAGATGTGACTATACGGCTAGAATACAAAGCCAATAAAGCTACAGATGAGTCTCCAGGAAAGGCCACACTCATAGTACAAGGTCTTAGTCGAGATGTGCTAAAGGCCACTCACGAAATCAATGAAATGCTTAAGTCAGCCAAAGAAAACGAGATCCTAAAAAAGGAAATGAATTTGATGAGTGAACTTGTGGATTGGCAGTTTGAACAGGGTGGGCAATATAAGAGTTTTGATGAACGTACAAATTTAGAATTGGAAAAGGCCCTTTCCAGACAAGCTGCAGACACCAGTATCACCTTCCAAGGCCAAACTTACCAGGTCAAACTGCCTGAAGGTCCTGCAGTGAACAATGCTGGTGGAAACCAGATGAACATCAGACGCATTGACAAACTGAAAGcAACTGAAAGTATTCCACAGCATTGGGATGCAATGGGGTCTAATGAATTAAACAAAAAGTTCAATTTGCAACCAACTAGCACAGAATACCAAGATGTGTTGGGGCGCTTCAAGGCAACTTGTAGAAACAACGTCTTGAAGatTGAACGAGTCCAGAATCCTGGGATGTGGAAGAACTACCTGAATAACAAAAGTGTCATGGAAAAAAAGAATGGTCATCAAAACAATGAGAAAAGACTCTTTCATGGAACCAGTGAGCAGACTATCAGTCACATTGAAAAAAGTGGCTTTAATCGGAGCTATGCAGGAAAAAATGCTGCAGCCTATGGAAATGGCACCTATTTTGCACTTAATGCCAGCTATTCGGCCAGTAACACATACTCAGTGCCAAATGCTCAGGGACATAAGCACATGTACCTCTGCAGAGTCCTAGCAGGAGACTACACTAAAGGACAAGGGGGGATGATTGTGCCACCAGCAAAAAATGCCAACTGTGACCTGTACGACACGGTTGTGGATAACCCTGCTGCTCCCACTATTTTTGTAGTATTCCGAGATGATAATGCTTATCCGGAATATTTAATCACCTTTACTTAAACTCACTGAAGAGAAGTCATTTCAGACATCACATCAGATATACAATCAGGAAGattttgcaaaaagaaaaaaaagttataataataatagagttcTTTATTGACTTAAAATTTGAAAGGGCTTTACTTCTGACAAATTTATTGTGCcttataataaatttattttgttatttctgcTGTAAAACGTTCAGCTGTTTACACATTTTTGTCTCTTTAATTCCAATGAtttcactgtatttttattaaatttgcataaATAATACACTGAGAAGCCAGATTGAAGCAAACT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000145120

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00073086 lncRNA upstream 239335 23511983 ~ 23526252 (+) False XLOC_037129
TCONS_00075108 lncRNA upstream 346057 23416749 ~ 23419530 (+) True XLOC_037127
TCONS_00073083 lncRNA upstream 398378 23364611 ~ 23367209 (+) False XLOC_037128
TCONS_00073082 lncRNA upstream 398583 23364611 ~ 23367004 (+) False XLOC_037128
TCONS_00073098 lncRNA downstream 29157 23808654 ~ 23809422 (+) True XLOC_037134
TCONS_00075109 lncRNA downstream 104859 23884356 ~ 23887281 (+) False XLOC_037136
TCONS_00075110 lncRNA downstream 105252 23884749 ~ 23887281 (+) False XLOC_037136
TCONS_00075111 lncRNA downstream 105584 23885081 ~ 23887281 (+) False XLOC_037136
TCONS_00073102 lncRNA downstream 116296 23895793 ~ 23904416 (+) True XLOC_037137
TCONS_00073093 mRNA upstream 10250 23748342 ~ 23755337 (+) True XLOC_037132
TCONS_00073092 mRNA upstream 10586 23748133 ~ 23755001 (+) False XLOC_037132
TCONS_00073089 mRNA upstream 46973 23665777 ~ 23718614 (+) False XLOC_037130
TCONS_00073091 mRNA upstream 47875 23714406 ~ 23717712 (+) True XLOC_037130
TCONS_00073085 mRNA upstream 140355 23511913 ~ 23625232 (+) False XLOC_037129
TCONS_00073097 mRNA downstream 29049 23808546 ~ 23812636 (+) False XLOC_037134
TCONS_00073099 mRNA downstream 45943 23825440 ~ 23841704 (+) True XLOC_037135
TCONS_00073101 mRNA downstream 116214 23895711 ~ 23906205 (+) False XLOC_037137
TCONS_00073103 mRNA downstream 121206 23900703 ~ 23902215 (+) True XLOC_037138
TCONS_00073104 mRNA downstream 229382 24008879 ~ 24021162 (+) False XLOC_037139
TCONS_00073090 other upstream 65131 23696924 ~ 23700456 (+) True XLOC_037131
TCONS_00073088 other upstream 209610 23547645 ~ 23555977 (+) True XLOC_037129
TCONS_00073080 other upstream 398378 23364242 ~ 23367209 (+) False XLOC_037128
TCONS_00073073 other upstream 719202 23046267 ~ 23046385 (+) True XLOC_037119
TCONS_00073071 other upstream 758609 23006451 ~ 23006978 (+) True XLOC_037117
TCONS_00073100 other downstream 106146 23885643 ~ 23886737 (+) True XLOC_037136
TCONS_00073118 other downstream 311410 24090907 ~ 24102291 (+) False XLOC_037141
TCONS_00073134 other downstream 604637 24384134 ~ 24387531 (+) True XLOC_037147
TCONS_00073135 other downstream 644295 24423792 ~ 24427240 (+) True XLOC_037148
TCONS_00073139 other downstream 1287164 25066661 ~ 25067730 (+) True XLOC_037151

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000009_08389932_08402359.mRNA True 6332 mRNA 0.41 16 CI01000009 8389633 ~ 8403022 (-)