RNA id: TCONS_00073085


Basic Information

Item Value
RNA id TCONS_00073085
length 3839
RNA type mRNA
GC content 0.51
exon number 23
gene id XLOC_037129
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 23511913 ~ 23625232 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACAGCTGCGATGGATCTCTGTCATCGCTTCTTCCTGCATCCTCCTTTCAGAGCTCTTCGCATTTCTCAGACAGTCGAGCTGCATACTTTGCCAAGCTAAACAAAAGAGAGGGAGGAGGTGGCTGGAGCCCCGAGTGGATGGACAGGTCTCCTTGGCTGCAGGTCGACCTCCAGGACAGAATGGAGGTGACAGCAGTGGCCACACAAGGACGTCACAGCAGCACAGACTGGGTCAGTGCTTACATGCTCCTGTACAGTGATACTGGACGCGTCTGGAAGCAGTACATGTTAGAGGACAGTGTTGGGAGAATTGTGGGTAACGTGAATACAGAAAGTGTGGTCCACCATAAACTGAGCCACTCAATCAGGACCCGCTTCCTCCGCTTTGTTCCTTTGGAGTGGAGCCCCAGTGGTCGCGTGGGCCTCAGAGTGGCGGTGTACGGCTGTGCTTACCGATCGTATGTGGCTGATTTTGATGGCAGAAGCTCTTTGCTTTACCGATTCAACCAGAAGTCTATGAGCACAGTGAAAGATGTTATATCGCTGCGATTTAAGAGTCGACAGGCAGAAGGTGTTTTACTGCATGGAGAAGGCCAGCGAGGAGATTATATCACTCTGGAGCTTCATCGTGGCAGGCTGGCCTTGCATCTAAACCTGGATGACAGCAGGGTGAGATCCAGCAGTGCCCGTATGGTGGTCACTCTGGGCAGTCTTCTGGATGATCTGCACTGGCACTCTGTCCTGATCGAACGCTTTAATAAGCAGGTCAACTTCACTTTGGACAGACACACTCAACACTTCAGGACCAAGGGGGACGGAGACTCTCTAGAGGTCGACTATGAGCTAAGCTTCGGTGGCATCCCACTGCCTGGTAAACCTGGGACTTTTATTCGACGCAATTTTCATGGCTGCATGGAGAACCTGTACTACAATGGAGTAAACATCATTGACCTGGCCAAACGACGAAAGCCTCAGATCTACAGTGTGGGCAACGTGACCTTTTCCTGCTCCGAACCACAGCTGGTGGCCACCACGTTTCAGAGCTCCAGCAGCAGCTTTCTGTCTCTGCCAGCACCTGCACCAGTCCTGGAGGGACTTTCGGTCCGACTGCAGTTTCGCACCTGGAACCCTGATGGTCTGCTGCTCTCCAGTCCACTGATCTCTGCTCAGGACTCTTGTTACCTGATTTTGAAGATCAGTAGTGGCCGTCTCCATCTCACACACCAGACGTCAGCACTAAAGATGTCAGAAGTGTCAGCTGGCCAGAGGGTGAATGATGGTTTGTGGCATTCAGTGAGTCTCAGTGCTCGAGGACTGCAGATGACCATGACTCTGGACAATGAGCCCGCATCCAGCATCCACCTGAAGAACTATCTGGAAGCCAAAGACAAACAATATTTTGGAGGATGTCCTGTATCCCAGAATGACTCCAGCTGCTTGAACCCCACAATGGCTTTTCAAGGTTGTGTTCGGCTCATCCTCATCAACAACCAACCTGTAGATCTTCTGTCGGTCCAGCAAGGCCATCTAGGAAGCTACAATCAGCTCCAGTTTGACTTATGCGGTATCCGTGACAGATGTCTGTATAATTTCTGTGAACATGGCAGCCGCTGTTCCCAGACATGGTCCTCTTTCTCGTGCGATTGCTCTGGTACAGGATACAGTGGAGCTACATGCCATAACTCTGTCTATGAAGCTTCGTGTGAACACTACAGGCTTGCGGGAAGCTCTTCTGGATATTTCTCAATAGATCCTGATGGAAGTGGTCCACTGGATCCTATTCAGGTCTACTGTAATATTACAGGAAACAAAGTGTGGACGGTGGTTCGACACAACAGCTCCAACCCAGTGCGAGTGCAAGGCTCTTCCCTGCAGAAGCCGCATGTGGAATGGTTCAATTACAGCAGCTCATCTGATCAGCTGAAGGCTCTGCTGTCCCTGTCAGAGCACTGTGAGCAGAGGATCTCCTACCACTGCAGAAAATCACGGCTCTTCAACCCGTGGGATGGTACCCCTTTGTCGTGGTGGGTGGACCGCAGGGGAGAGAAGAGGACCTACTGGGGTGGATTTCAGCCTGGGGTTCAGCAGTGCTCCTGTGGCCTGGAAGAGAGCTGTGCCGACATGAACTACTTTTGCAATTGTGATGCAGACAGAGTGTCATGGGAGAATGACACTGGTGTCCTCTCATATAAGGAGCACTTGCCCGTGCGGGAGATTGTGATCGGTGACACTTACAGACTGGGCTCTGAAGCTATGTATGTCGTGGGGCCCCTGCAGTGCTCTGGGGATAAGTCCCTCTGGAATGCTGTGTCTTTTTATCAAGCGGCTTCATATCTGCAGTTCGCGTCTCTGCAGGCAGAGCTTTCTCTCGATGTCTCCTTCTTCTTCAAGACCGCTTCCCCCTCTGGTGTATTCCTTGAAAACATTGGCCTTCACGACTTCATCAGGGTTGAGCTGAGCTCTCCCACAGCGGTGACTTTCTCCTTTAATGTGGGCGACGGGCCAGTAGTCCTGACAGTCAAATCTCCTGTGCCACTGAACGACAGGCAGTGGCATTGGGTTCGAGCCGAGCGCAATGTGAAAGAGGCATGCCTGCAGGTTGACCAGCTGCCCTTGCGGATCATTGAAACGCCACCTGATGGACACCTTCGTCTTCAGCTTGGAAACCAGCTGTTTGTTGGGGGCACCGCTACAAGACAAAGAGGCTTTCTCGGATGTATTCGGGCATTTAACATGAATGGAGTGAATTTTGACTTGGAAGAAAGAGCCAAAGTGACACCAGGAGTGAGTTCAGGATGTGCAGGTCACTGCAGCAGTTCAGCCGGGCTCTGCCACAACAGGGGGAAATGCGTTGAGAAGAGCAGTGGTTACATGTGTGACTGCACTAACTCTGCTTACGGAGGACCCTCTTGCACAGAAGAGGTGTCCATGTCCTTTGAAAGAGGAGCATCGGTCACCTACATTTTTCAGGAGCCGTTCTCTGTGATCCAGAACCGGTCAGCCGCAGTTCTGTCAGTCCCTTCACAATACAGCAAATCCAGAGACAACATGGCACTAAGTTTCCAGACCACTCAGAGTCCTGCTATGCTCCTCACAGTCAACACTCTCAGCCAGCAGTATGTGGCCGTCATCCTTGCTCGAAATGGGAGTTTGCAGATCTGGTACCAGCTGCATAAGGAGAAGAGGCCGGATGTGTTCAGCCCCATCCTGAGCAGCCTGGCAGACGGACGACTGCATAGAGTTCACATCCAGCGGGAGGGAAAAGACGTGTTTGTTCAGGTTGACCGTGAAAATAAGAAGTACACTCTTTCATTTGATGCCAAGTTTAACTCTATGAAGTCACTGACCTTGGGAAAAGTCACAGGACGTGATTTAATGGATGATGAAGTAGCTCATGCTGGATCCAAAGGATTTGTTGGCTGCTTCTCTTCTGTCCAGTTCAATCATGTGGCTCCACTGAAGGCAGCGTTATTAAATCGGGGAAGTTCTTTGGTCAGCATACGAGGAAATTTACTAGAGTCAAACTGCGGAGCTTTGGCTGACCTTTCAACCTCTGTGTCCCGTTTAGATCATGGCGAGGAGGTGGGAAAAGATAACAAGCATCATGAAGACGCCAGTCAGCCTGATTCCGCTGTAATCGGAGGTGTGGTGACGGCAGCAGTGTTCAGTACCGTCTGCGTGTTGGCAGTGATGCTCCGCTTCCTTTACCAACATCGACAAGCTCAAAGAactgcctcactgcaagaaaagGAGCACCAGCGTAGCCTTGAAGCTGCTTACAGGGCAGAGTTTCACCTTCATAAGTCCATGAGAGACAGCATGCAGGAGTACTACATCTGA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-081105-126 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human CNTNAP5 (contactin associated protein family member 5).

Ensembl:

ensembl_id ENSDART00000137759

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075107 lncRNA upstream 55568 23363854 ~ 23456345 (+) False XLOC_037127
TCONS_00075106 lncRNA upstream 92383 23363848 ~ 23419530 (+) False XLOC_037127
TCONS_00075108 lncRNA upstream 92383 23416749 ~ 23419530 (+) True XLOC_037127
TCONS_00073081 lncRNA upstream 144704 23364582 ~ 23367209 (+) False XLOC_037128
TCONS_00073083 lncRNA upstream 144704 23364611 ~ 23367209 (+) False XLOC_037128
TCONS_00073098 lncRNA downstream 183422 23808654 ~ 23809422 (+) True XLOC_037134
TCONS_00075109 lncRNA downstream 259124 23884356 ~ 23887281 (+) False XLOC_037136
TCONS_00075110 lncRNA downstream 259517 23884749 ~ 23887281 (+) False XLOC_037136
TCONS_00075111 lncRNA downstream 259849 23885081 ~ 23887281 (+) False XLOC_037136
TCONS_00073102 lncRNA downstream 270561 23895793 ~ 23904416 (+) True XLOC_037137
TCONS_00073079 mRNA upstream 198571 23255410 ~ 23313342 (+) False XLOC_037125
TCONS_00073078 mRNA upstream 198571 23255410 ~ 23313342 (+) True XLOC_037125
TCONS_00073077 mRNA upstream 277849 23232901 ~ 23234064 (+) True XLOC_037124
TCONS_00073076 mRNA upstream 280710 23224761 ~ 23231203 (+) True XLOC_037123
TCONS_00073075 mRNA upstream 349529 23124252 ~ 23162384 (+) True XLOC_037121
TCONS_00073089 mRNA downstream 40545 23665777 ~ 23718614 (+) False XLOC_037130
TCONS_00073091 mRNA downstream 89174 23714406 ~ 23717712 (+) True XLOC_037130
TCONS_00073092 mRNA downstream 122901 23748133 ~ 23755001 (+) False XLOC_037132
TCONS_00073093 mRNA downstream 123110 23748342 ~ 23755337 (+) True XLOC_037132
TCONS_00073094 mRNA downstream 140355 23765587 ~ 23779497 (+) False XLOC_037133
TCONS_00073080 other upstream 144704 23364242 ~ 23367209 (+) False XLOC_037128
TCONS_00073073 other upstream 465528 23046267 ~ 23046385 (+) True XLOC_037119
TCONS_00073071 other upstream 504935 23006451 ~ 23006978 (+) True XLOC_037117
TCONS_00073057 other upstream 849185 22658229 ~ 22662728 (+) True XLOC_037111
TCONS_00073048 other upstream 934854 22576945 ~ 22577059 (+) True XLOC_037108
TCONS_00073090 other downstream 71692 23696924 ~ 23700456 (+) True XLOC_037131
TCONS_00073100 other downstream 260411 23885643 ~ 23886737 (+) True XLOC_037136
TCONS_00073118 other downstream 465675 24090907 ~ 24102291 (+) False XLOC_037141
TCONS_00073134 other downstream 758902 24384134 ~ 24387531 (+) True XLOC_037147
TCONS_00073135 other downstream 798560 24423792 ~ 24427240 (+) True XLOC_037148

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000009_08495464_08536041.mRNA True 5176 mRNA 0.49 23 CI01000009 8495200 ~ 8537119 (-)