RNA id: TCONS_00073089


Basic Information

Item Value
RNA id TCONS_00073089
length 1451
RNA type mRNA
GC content 0.39
exon number 4
gene id XLOC_037130
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 23665777 ~ 23718614 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAGGACTGAAAGGGGAAGTTCACATGCTCTACATTTAAACTTAACGGATCTAAAAACAGCCCTCTGCTATGATTTCTCAAGTTATTTCTATGCAGTTAGAAAGTGAAAGAACAACAGAGTAGTGGACATATTTTTGTTCCTAGAAAAAGGGCAGGAGAACAGTTTGGAGGCTGTGGGAGAACTTGTTGAGGAAAAGTTGATGTCCCTTCATCCCTGAGTACCCTCTCCCACAGCTGTCCCCCTTAATCTTACTGCCAAATATCCCTTCGCACATCTGGAATGGACAACCAAAATGCACAAACTGCTAACAGAGACTCTACTCGGGGACCTTATTTTGAAGCCATAGTTGGAGTTGTCATTACGGCAGTGGTTCTGGTCCTGCTCCTCCTCCTGGCCATCATTCTGCGATACATGTACCAGCACAAGGGCACATATCATACCAATGAGGCCAAGGGCACAGAGTTTGCAGAGACAGCAGATGCTGCCCTTCGCAGAGACCCAGCCCTGCAGGACGCCGTGGATGAAAGCAAGAAAGAGTATTTCATATGAGACCATAAACAGCCCTTTATACGTGCCATATAACAAACTGCGATGCAGGCTCACATGATGCCTTAATACTGTTTGCTGGAGCAGTGACGTAGAGCTGACTGAGCTtctgcaaacacaaacaaacaagagtGATATGAAATTCCTCTATTTGTCAATACTGGAGAGTGATTTCATTTATTTCCATCTGATAAACAGGAAATATTTGAGGTATACATAGAACAATTTGCCATACTCTTTGTATTCAAAGCCGGCTTTCTGTACAAACATCAGCTGAGGGGAATGTGATGGTGTTCAGGTGAAGACAAGGACATTTATAGGACTTACTAAACAGTATATGATGGTGAATGGCAAGAGGATTAAGAAgtaaaattagaaaaaaacaagcttttATTGACAAACTAGGAAGTCAAGGAAGGATTGTTTTTTAAGTTTGCCAATTAAAATTTCTTACATATAACTTAAATCCTAAAACACTCTTTTAAAAATGCCTCTAAAAGCCAATCTTAAAAATTTTATGAACaacatatttactttttttgaaaagaaaatgacCAGCTTTGTTCATTTCGTTTAGTTTTTCGTAGTAGTTTAATCCCAAAGGGAAATTCACGTCACAGCAGAGCTCATCATACaatgaaataagtaaataataaaagtggAAAAACACACATCCATACTGCACCCCTTAGTTTCAAGCAATAAGTAGACAGTAGTCCATGCCTATCAATACAATTTCAGTTATCAATTTGCCATTCAAAATTTGACATTGATTATACAATCTAATCGCTGTTGGTAAAAAAAGACTTTCTGTATCGTTCCCTGTATCTATTCCCTCCAACACCAGGGCTGAATTAATCTTGAGCTTAAAGAGTTTGCACGAGTTGTACTGCATGTCTCAAAAA

Function

GO:

id name namespace
GO:0019897 extrinsic component of plasma membrane cellular_component
GO:0030863 cortical cytoskeleton cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005515 protein binding molecular_function

KEGG:

id description
ko05144 Malaria
ko04090 CD molecules

ZFIN:

id description
ZDB-GENE-030131-7930 Is extrinsic component of plasma membrane. Is expressed in nucleate erythrocyte. Human ortholog(s) of this gene implicated in malaria. Orthologous to human GYPC (glycophorin C (Gerbich blood group)).

Ensembl:

ensembl_id ENSDART00000060905

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00073086 lncRNA upstream 139525 23511983 ~ 23526252 (+) False XLOC_037129
TCONS_00075107 lncRNA upstream 209432 23363854 ~ 23456345 (+) False XLOC_037127
TCONS_00075106 lncRNA upstream 246247 23363848 ~ 23419530 (+) False XLOC_037127
TCONS_00075108 lncRNA upstream 246247 23416749 ~ 23419530 (+) True XLOC_037127
TCONS_00073081 lncRNA upstream 298568 23364582 ~ 23367209 (+) False XLOC_037128
TCONS_00073098 lncRNA downstream 90040 23808654 ~ 23809422 (+) True XLOC_037134
TCONS_00075109 lncRNA downstream 165742 23884356 ~ 23887281 (+) False XLOC_037136
TCONS_00075110 lncRNA downstream 166135 23884749 ~ 23887281 (+) False XLOC_037136
TCONS_00075111 lncRNA downstream 166467 23885081 ~ 23887281 (+) False XLOC_037136
TCONS_00073102 lncRNA downstream 177179 23895793 ~ 23904416 (+) True XLOC_037137
TCONS_00073085 mRNA upstream 40545 23511913 ~ 23625232 (+) False XLOC_037129
TCONS_00073087 mRNA upstream 40545 23522656 ~ 23625232 (+) False XLOC_037129
TCONS_00073079 mRNA upstream 352435 23255410 ~ 23313342 (+) False XLOC_037125
TCONS_00073078 mRNA upstream 352435 23255410 ~ 23313342 (+) True XLOC_037125
TCONS_00073077 mRNA upstream 431713 23232901 ~ 23234064 (+) True XLOC_037124
TCONS_00073092 mRNA downstream 29519 23748133 ~ 23755001 (+) False XLOC_037132
TCONS_00073093 mRNA downstream 29728 23748342 ~ 23755337 (+) True XLOC_037132
TCONS_00073094 mRNA downstream 46973 23765587 ~ 23779497 (+) False XLOC_037133
TCONS_00073095 mRNA downstream 52052 23770666 ~ 23779525 (+) False XLOC_037133
TCONS_00073096 mRNA downstream 53902 23772516 ~ 23779499 (+) True XLOC_037133
TCONS_00073088 other upstream 109800 23547645 ~ 23555977 (+) True XLOC_037129
TCONS_00073080 other upstream 298568 23364242 ~ 23367209 (+) False XLOC_037128
TCONS_00073073 other upstream 619392 23046267 ~ 23046385 (+) True XLOC_037119
TCONS_00073071 other upstream 658799 23006451 ~ 23006978 (+) True XLOC_037117
TCONS_00073057 other upstream 1003049 22658229 ~ 22662728 (+) True XLOC_037111
TCONS_00073100 other downstream 167029 23885643 ~ 23886737 (+) True XLOC_037136
TCONS_00073118 other downstream 372293 24090907 ~ 24102291 (+) False XLOC_037141
TCONS_00073134 other downstream 665520 24384134 ~ 24387531 (+) True XLOC_037147
TCONS_00073135 other downstream 705178 24423792 ~ 24427240 (+) True XLOC_037148
TCONS_00073139 other downstream 1348047 25066661 ~ 25067730 (+) True XLOC_037151

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000009_08444920_08447297.mRNA True 1596 mRNA 0.38 3 CI01000009 8443597 ~ 8447297 (-)