RNA id: TCONS_00073103


Basic Information

Item Value
RNA id TCONS_00073103
length 1513
RNA type mRNA
GC content 0.44
exon number 1
gene id XLOC_037138
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 23900703 ~ 23902215 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATAGATCTGACAACTGCAGGGAATCATTTACTGCTGTGTGCAGCAGCTTGTTTTTAACCTCATTTTTCAAGGAGAACGCCACTAAAGTGATACAGCAAAAGGAGCCAGAGCAACCACCAACATGGACATTCAGCGAACTGCCTCTTTGTTGGGGACTCCTGACTCGATGGAGAGCCTTGAGAAACAGCTAAGCTGCCCAATATGTCTGGACATGTTTACCAAACCAGTGGTCATCCTGCCGTGTCAGCATAACCTGTGTCGAGGATGTGCTAGTGATCTTTATGACTCTCGAAACCCTTATCGTTTCTCTGGTGGTGTTTTTCGGTGCCCAACTTGTCGATTTGAAGTGGTTCTTGATCGCCATGGTGTGCATGGACTTCAGAGGAATCTTCTTGTTGAGAACATAATCGACATTTACAAACAGCAACAAGAGGGTGGTGGAGGAGGTGGTGGCAGCACCACTGAAAGTCCAATAAAACCCAAAAGCTCCAAAGAGCTAATGTGTCAAGAACACGAGGACGAGAAGATCAACATCTACTGCGTTACTCACCAAACTCCCACTTGTTCCATGTGTAAGGTATTTGGCCAGCATAAGGACTGTGAGGTGTCACCACTTGCTAGTGTCTATCAGGCTCAAAAGGGAGAGCTGAGCAATGCCATTGATGCTCTTGTGGCGGGGAATGGCCGCCTTCAGGCGTTGCTTAACCAGATGGAGGAGGCCTGCACAGCTGTTCAGGACAATGCTCAACGTGCCAAACAAAAGCTTGGCGAATGCTTCGATTCCCTCTATGCAGCCTTGGAGGAGCGTAAAAATGCCCTCTTAGAGCGTATTGGCAAAGAGCAAGACGAGAAGGTTGGTGCACTCAGGAGTTTGGCTAGGCGTTATGGGGACCGTCTTCAGGCAGCCACAGAGTTAACAGACATGGCAGTTCAGGCTCTGGAGCAAAGTGGTGCCGCAGAGTTCCTGCAGGCCTCCAAGAACCTGATCTCCCAGACAAAAGACGCAGCAAAGAGCTCACTTGCTGAAGAAAGGCCCGAGCCAGGCTTTGAAAGAATGGACCATTTCACTTTGGATACGGAGCAGGTGGAGACTTTGTTGTCCAAGATGGACTTTGGAGGAGAGGATGATGAGGAATTTGAAGACGCTGAAGATCAAGAAGAGGAGTAAATAAGTTGGAAGAAAAGAAGAGGTTTAGGAAGGTTTAGCAAGGTCATTGACAAATGAGAAAATAGAAGTTTTAATATTCGTATTTCACTGCTAAGCAGTGTTGTCATTTCAACATGTATAATCAAAAGAATATTTCCAAATAACTAGGTGccattttttatactttttataattTAGTCAAAATGCTGCTGTTGTTCTTAAAAGTTATCTTCCTACTTTTGTTTCGCTCAGAAATGAGTCACtgttgtttatttctgcagtctgTTGTTACTAGTTCTGTATTTTCAGTTTACTCTGTTTTTTAATGTTCTttattgtttgaaaataaataaaattgaaaattga

Function

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1003 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination. Predicted to be active in cytoplasm. Is expressed in brain; cardiovascular system; gonad; and musculature system. Orthologous to human TRIM63 (tripartite motif containing 63).

Ensembl:

ensembl_id ENSDART00000127859

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075109 lncRNA upstream 13422 23884356 ~ 23887281 (+) False XLOC_037136
TCONS_00075110 lncRNA upstream 13422 23884749 ~ 23887281 (+) False XLOC_037136
TCONS_00075111 lncRNA upstream 13422 23885081 ~ 23887281 (+) False XLOC_037136
TCONS_00073098 lncRNA upstream 91281 23808654 ~ 23809422 (+) True XLOC_037134
TCONS_00073086 lncRNA upstream 374451 23511983 ~ 23526252 (+) False XLOC_037129
TCONS_00073107 lncRNA downstream 118298 24020513 ~ 24023369 (+) True XLOC_037139
TCONS_00073116 lncRNA downstream 164022 24066237 ~ 24088688 (+) False XLOC_037141
TCONS_00073122 lncRNA downstream 218891 24121106 ~ 24123115 (+) True XLOC_037142
TCONS_00073129 lncRNA downstream 290824 24193039 ~ 24197859 (+) True XLOC_037145
TCONS_00073131 lncRNA downstream 307426 24209641 ~ 24212884 (+) False XLOC_037146
TCONS_00073099 mRNA upstream 58999 23825440 ~ 23841704 (+) True XLOC_037135
TCONS_00073097 mRNA upstream 88067 23808546 ~ 23812636 (+) False XLOC_037134
TCONS_00073095 mRNA upstream 121178 23770666 ~ 23779525 (+) False XLOC_037133
TCONS_00073096 mRNA upstream 121204 23772516 ~ 23779499 (+) True XLOC_037133
TCONS_00073094 mRNA upstream 121206 23765587 ~ 23779497 (+) False XLOC_037133
TCONS_00073104 mRNA downstream 106664 24008879 ~ 24021162 (+) False XLOC_037139
TCONS_00073105 mRNA downstream 106664 24008879 ~ 24023353 (+) False XLOC_037139
TCONS_00073106 mRNA downstream 106798 24009013 ~ 24023369 (+) False XLOC_037139
TCONS_00073108 mRNA downstream 122812 24025027 ~ 24025404 (+) True XLOC_037140
TCONS_00073109 mRNA downstream 163640 24065855 ~ 24114583 (+) False XLOC_037141
TCONS_00073100 other upstream 13966 23885643 ~ 23886737 (+) True XLOC_037136
TCONS_00073090 other upstream 200247 23696924 ~ 23700456 (+) True XLOC_037131
TCONS_00073088 other upstream 344726 23547645 ~ 23555977 (+) True XLOC_037129
TCONS_00073080 other upstream 533494 23364242 ~ 23367209 (+) False XLOC_037128
TCONS_00073073 other upstream 854318 23046267 ~ 23046385 (+) True XLOC_037119
TCONS_00073118 other downstream 188692 24090907 ~ 24102291 (+) False XLOC_037141
TCONS_00073134 other downstream 481919 24384134 ~ 24387531 (+) True XLOC_037147
TCONS_00073135 other downstream 521577 24423792 ~ 24427240 (+) True XLOC_037148
TCONS_00073139 other downstream 1164446 25066661 ~ 25067730 (+) True XLOC_037151
TCONS_00073140 other downstream 1171324 25073539 ~ 25074199 (+) True XLOC_037152

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000009_08283637_08293491.mRNA True 2007 mRNA 0.47 7 CI01000009 8283358 ~ 8293491 (-)