RNA id: TCONS_00073105


Basic Information

Item Value
RNA id TCONS_00073105
length 1874
RNA type mRNA
GC content 0.46
exon number 13
gene id XLOC_037139
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 24008879 ~ 24023369 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGCAGGGCTCAGTTTTGGCAGCAACTAACTTACAAGATTAAATCAGATGTTTCAGAAAGACCTCTGAGGTGGGGTTTAAATACTTTGCTTGCCCTTCCCAACCACACGGTTAATTGGACATGTGATAAACACAGCAGCTTGGTTTGCTGCCTGAAATGGTCAGCTGAAATTCAACCGGACTACTACAAGCTGCAACATCAACTCCAGatgCTTTCTCACTCCACCGGATGAGATTCAAGATGATGCCCAGCAGCAGTTCAGGAAAGAATCTGGATCTCTCTCGGCTAACAGACGATGAAGCCAAGCACGTCTGGCAGGTGATCCAGAGAGATTTCCACCTGCGAAAGAAAGAGGAGGACAGACTAGGgGAACTCAAGACTAAAATTATGAAAGAGGACAACAAGAGAGAGCTGCTGGAATATCAGCCTAAACTCAGTGATTCACTCTGCATTCGCTGTCTCCAACCCTTCAAATTCTTGGTCAACAGCAAGCGCCAATGTTTGGACTGCAAACTGTTTGTCTGCAAGTCCTGCAGTCGTTTTAACAAGAAAGACAGCGGTTGGGTGTGTGATCCATGCCACATGGCCAGAATGCTTAAGATTGGCACTCTAGAATGGTTCCATGAGAATGTACGCTCTCGCTTCAAGCGCTTTGGGAGTGCAAAGGTGATGAATTCGCTTTTCAAGAGGGTGAACAGTGACCGTGCCTGCTCTCAAACTGACCTCAGAGAGCCTCGAGACGATGACACGCACAGCATGCCTGAAGTTCACACTGCTTCTGTCTATAGTCAGGAAGATGAGCAATCTGAGAGGACTGACCGACGCCACCTTAGCCTGCATTCAGGTAGCCAGGAGAAAATAACCCAGACTAAGGACTCACTAGCAGAAGATGACTGGTCAACAACTGTTAAGCAGATACTAGAGAATGGAACTCATGGCAGAGGCAATGAGATTAAGGATATAATGCATATCAGCCAAAAGAGTCTGGACAAAGCCTCTCATTTTGATGACTGCACACCCCACCTAAACCAGAGGTTGGCAAAGTCATGTTCCCTCTCCAAAATGAGCCTCTCTTCAGCTGGCAGCACCAACTATCACCTCCAGCGCGAGCTTTCTTACAGCCTGGATGACTccgatgatgatgaggatgatgatgaagaagaatcAGAGATGAATGTTATATACAGTCATGCCCTACATAGGGAGCCCTCACCAGATGAGGTTCCTCCACAGATTATTGAGCTCAACAAGCGTATGTCAGCAATTGAATCTATTCTGAGCCGTTTGGAGCAGAAAATGACTTTGCCAATAATTGGGGGATCAGTTGAACAGGTTGAGCAGAAAGCTGAGGATTTGTCTCCAGCTGATTTAGAGGAGCTTGAGCTTAGGAAAAAGCTTGATGAACTCACTGAAAAAATAAGCGACAAAGGCTTTTCATCTGATGAGGAAGATGCAATTAAATCACCAATGGCCTCTCCAAAGAAAAGTGCAGTTTACCAAGTTTCACCTATAAGAGGAGCTTCAGCTGGACTTGTCCGACCTGACTGGCCTCTTGAGGCTGAATGGAAAGCAAAGCCGAATGCACACAAATCATTAAAAAAGCAGAAGAGGGTGAGTTCCTTTGAGTTTAGTAACACAACTAGCTGTGAGCTGTCACAGCTGGAGGGTAAAGTTGCAATGGCAGCAGCCAGCGTCCAGAGCACTCAAAGTGGGGTTACAGACATTCAGAAACGAATCGCTGCTTTGAGTGCAGCAGGGATGACAGTGGAGACATCCCGCAGACGGGAGGCAGCAATGAAGCAAGATCATTACGGAAGTTGGTCACTATGTGAAACAATGACAGAACAATTTCAAAACAATGACAGATTCACATAA

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0030864 cortical actin cytoskeleton cellular_component
GO:0017022 myosin binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070803-2 Predicted to enable actin binding activity and myosin binding activity. Predicted to act upstream of or within intracellular protein transport. Predicted to be active in cortical actin cytoskeleton. Human ortholog(s) of this gene implicated in Griscelli syndrome type 3. Orthologous to human MLPH (melanophilin).

Ensembl:

ensembl_id ENSDART00000191843

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00073102 lncRNA upstream 104463 23895793 ~ 23904416 (+) True XLOC_037137
TCONS_00075109 lncRNA upstream 121598 23884356 ~ 23887281 (+) False XLOC_037136
TCONS_00075110 lncRNA upstream 121598 23884749 ~ 23887281 (+) False XLOC_037136
TCONS_00075111 lncRNA upstream 121598 23885081 ~ 23887281 (+) False XLOC_037136
TCONS_00073098 lncRNA upstream 199457 23808654 ~ 23809422 (+) True XLOC_037134
TCONS_00073116 lncRNA downstream 42884 24066237 ~ 24088688 (+) False XLOC_037141
TCONS_00073122 lncRNA downstream 97753 24121106 ~ 24123115 (+) True XLOC_037142
TCONS_00073129 lncRNA downstream 169686 24193039 ~ 24197859 (+) True XLOC_037145
TCONS_00073131 lncRNA downstream 186288 24209641 ~ 24212884 (+) False XLOC_037146
TCONS_00073133 lncRNA downstream 186312 24209665 ~ 24212884 (+) False XLOC_037146
TCONS_00073101 mRNA upstream 102674 23895711 ~ 23906205 (+) False XLOC_037137
TCONS_00073103 mRNA upstream 106664 23900703 ~ 23902215 (+) True XLOC_037138
TCONS_00073099 mRNA upstream 167175 23825440 ~ 23841704 (+) True XLOC_037135
TCONS_00073097 mRNA upstream 196243 23808546 ~ 23812636 (+) False XLOC_037134
TCONS_00073095 mRNA upstream 229354 23770666 ~ 23779525 (+) False XLOC_037133
TCONS_00073108 mRNA downstream 1674 24025027 ~ 24025404 (+) True XLOC_037140
TCONS_00073109 mRNA downstream 42502 24065855 ~ 24114583 (+) False XLOC_037141
TCONS_00073110 mRNA downstream 42579 24065932 ~ 24092777 (+) False XLOC_037141
TCONS_00073111 mRNA downstream 42579 24065932 ~ 24102295 (+) False XLOC_037141
TCONS_00073112 mRNA downstream 42579 24065932 ~ 24105267 (+) False XLOC_037141
TCONS_00073100 other upstream 122142 23885643 ~ 23886737 (+) True XLOC_037136
TCONS_00073090 other upstream 308423 23696924 ~ 23700456 (+) True XLOC_037131
TCONS_00073088 other upstream 452902 23547645 ~ 23555977 (+) True XLOC_037129
TCONS_00073080 other upstream 641670 23364242 ~ 23367209 (+) False XLOC_037128
TCONS_00073073 other upstream 962494 23046267 ~ 23046385 (+) True XLOC_037119
TCONS_00073118 other downstream 67554 24090907 ~ 24102291 (+) False XLOC_037141
TCONS_00073134 other downstream 360781 24384134 ~ 24387531 (+) True XLOC_037147
TCONS_00073135 other downstream 400439 24423792 ~ 24427240 (+) True XLOC_037148
TCONS_00073139 other downstream 1043308 25066661 ~ 25067730 (+) True XLOC_037151
TCONS_00073140 other downstream 1050186 25073539 ~ 25074199 (+) True XLOC_037152

Expression Profile

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