XLOC_037159


Basic Information

Item Value
gene id XLOC_037159
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 26028731 ~ 26032109 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00075117
TgatataaaaaagagagagaaaaagtacttgtttttgttttaaaaactttttacattctgttttttttttcatcattgttGTGGCTTTGAATACGTATCCCATGATCCTCCTTGGTGGGTGTTCAAGAGCAGCGTTCCACACCAGCGGACGTTCACTCTACCACGCAGGGGCTGATGGGTAAATCACTTCCTCTACTAATCCCTTTAGAGACATCATATTTTATAGCACTTCTTCTCTACTTTCTTTCTCCCTATTTCCACTTACAATTCAAGTCTGGTCTAAGTCTAATTCCACTTCATTTTCCTTCCCCCTCATGCAAACTCTGCAGATGTGTTcataatattttctatttatgaGCATTCCGCAGCATATTTACAGATACATATGAGACACTACACTCGCATTAGTCAAATCTCAAAGGCTGAACCCTACAGGACATCCACTGTAATTAAACCTCAAAAACTCATCTCACGCAGTTCAGGGCTCAATTTATTGCACTTATCCATCTCTCCAAGCACCTTTCCTTCCACTCCCTGCTGTCCTGAGTCTGGAAGAGTCCTAACTGAGTGTTAAAATATTAACAGACTGTGGCTCATTAAAATGCTGTTGTGTGTTTCTCTCACAGAGAGCTTTTGTTCAGCAGGACATCAGCAATACCACCAGATCTTCAACCCACTGCTGCTGCATCCTCTGCCCAGTGAGAGGCCTTCACCTCAGGCACAGACTACAGCGTCCATCCCAATGGAGGCTGGACACACATGGAAAGAGAGAAGGAATAAATATAGACAGATGAATCTATGCAGATTTGTCTATAATCTGAAGTGATGAAATTAGAGGTAAACCTACACATTCTTACATTTTATATCATTAATTAGTTCAATTTGAAGTTATCATTACATGAgtaaaaaaaagctgtttaaaatatgCCATATAATTGCATTGATTCAGTTTGTTAAATTGTATTTGATATCTATGCAGGACCACAATgtactttaaaatacaaacatgcattttgtttattgatgtttattttagctagaatgagTGTTATCTTTATGCCACTGGAGTAACTTATTTTGCTGCTGAGTTGTGTTTTAgatgaaatataggctaaattataattatactcaACAAAAGGGGTGGACAGAGATGTATTTtggtgttttattataaataaaaacacaggcatgaaTTAATATCTAGCTCAGcataaacagatgagttttataAAGTTTAAGGCTGTTCTTTCACTGCAGAAAAAtcacagtaagagctgagtgatatgacactatgcataaacatgcattaaacactTATATTCAGCAGTTTGCACGATGCCTCAAAACAAAAAGGTTCAGCAAGTTAAATAATATACACTTTAAGCtatcaaaatatacatttaaacagagcttataataaatgtattatccaAATGTGAATACTATGTGGTCTTGCAAAGCTACCTGCTTGTTTTTAGTCTCCCTGCCTCTcctattttcaaaataagagtcctgcATACCTAGTATGGTTAATACAAGCTTGGAAAACATGTTGTAATCTCAATAGGAAAGTTGTGTACAGCCAAACCCTGTCTGTGGCATGCAAATTAAGGATGCACTGTCAGAGCAATGGCAGATTGGTGATTTATCCTGATTTTCATtgcaattttataataatttctaAGCATTTTATaaggatttacatgagaatgaggagATAGTGATGTTTGAGGCTCATGGTATGTCCTTTTCATTTGCTGAATAGGTATTATTCTATGCCTAGGCATGTCCAGATttgcattctatggcaccttaaaagcaaatttttaaacatGATGTACTCTCACGATGAGCCATATTAAAGTGACTGAAAGCCATCTACATGAAGTTCAAAAGGACAACCCTTTCAGCCACAGCAAGAGAAGCTGGTCCTCCAAAATCtgttatttctaaaatattgCATCTGTACAGTGTCACTAACTCATTCAAGTTCCACCAAAAATGCTGGTCATCCATGAAAGACAAATGCTTGAGAAGACAGTATAATGCAGAGGATCTAAATTGACAATTGGTTCAACACTGGTGCTAGAACTGCTCTCTGAATAGAATAAAGATCTGTATCTTAGCATGCAGTGTCTCGATTTTTAAGAGAATTTGGACTGAAAGCCCTCAGTGCCCAAAGCTCTTATCAGCAGTGAGAATCAAAAGGCCAGACTAACCTTTGCTGAGCAGCATGTTGTGTGGACAGAGAACTGCAAAGTTCTCCAAAGTTCACTTGCAAGTTTAATGTCTGATGGAAAGCAGTATGTTTGTCATCTAACTGGCGAAAGACAAAACCCAAAGTGTGTAAAGAAGCCACACACTTCCTACTAATTTTGACTGATTTCACCTTCATAAATTTGTTCCAGTCATCATGATACACTCATTGCTGTTATCtgtaaagaaaatataataaaaatttccACAAAATGAATAGCTTTCATTGTTTTACCAGCATGGTATTGTCATAAAATtctctaaaaatattttaaacaatgaagATCTAGTGTTTTTAAATTGCActctaattttgatctccacGGTATTCTGATACCTTCCCCCATCTTTCCtgatttctctctccctctctctctctctctctctctctctctctctctctctctctctctctgtctttcacaCCCATCACTGATCCCCAAGTGTACCCCGTCTCTCCAGGAGTCGTTGATATGGGGATTAACTCCGAAGTGTCAATCAATTCTGTTTTTtctatctctctttctttcaGCGCACAAGTATTTAATTGACACAGAGAGCGCCAGCCCGTGTTTTGAGTCTGCTTCATCCCTGCGCTCTGCTCCAGGTCATGGCTTTTAGAGATGGAGAGAGGGTGAGGAAAGAATGAAAAGTGAACCGAGAGAAAGGATCTGAAAGTGCAATTTCCTCGTGCACATGTGGGAACTCAATTCTGCTTGGCCGACTCTTCTTAAACCTGTACGTGATGAATGAGTGAAGTTATAAAGCTGAAGCAAACATGTTTTTGGATGTTAAAAGACTTTCTCCTATCCATGCTTAATGTGGAAAGACAACTGTGAGCAAGCAATTTGTTGGCCGATTTCCCTAGAGAGTGTAAATAGCGTCTGGCAGAGCTAGTGCAACAAGAATttcacaatttagcttatttttttgttacacatatttaaaaaatgatttaagattGATGATGTTAAATATAGGGCTTTTTCTATTGGTAATCATGCAAAAGCAATATATTAAAATTGTATGAACAAATGGCTGTAAAATCTGGAGCAATTgtaaagtttaaatt
>TCONS_00074900
ATGGAGAGCTTTTGTTCAGCAGGACATCAGCAATACCACCAGATCTTCAACCCACTGCTGCTGCATCCTCTGCCCAGTGAGAGGCCTTCACCTCAGGCACAGACTACAGCGTCCATCCCAATGGAGGCTGGACACACATGGAAAGAGAGAAGGAATAAATATAGACAGATGAATCTATGCAGATTTGTCTATAATCTGAAGTGATGAAATTAGAGCGCACAAGTATTTAATTGACACAGAGAGCGCCAGCCCGTGTTTTGAGTCTGCTTCATCCCTGCGCTCTGCTCCAGGTCATGGCTTTTAGAGATGGAGAGAGGGTGAGGAAAGAATGAAAAGTGAACCGAGAGAAAGGATCTGAAAGTGCAATTTCCTCGTGCACATGTGGGAACTCAATTCTGCTTGGCCGACTCTTCTTAAACCTGTACGTGATGAATGAGTGAAGTTATAAAGCTGAAGCAAACATGTTTTTGGATGTTAAAAGACTTTCTCCTATCCATGCTTAATGTGGAAAGACAACTGTGAGCAAGCAATTTGTTGGCCGATTTCCCTAGAGAGTGTAAATAGCGTCTGGCAGAGCTAGTGCAACAAGAATttcacaatttagcttatttttttgttacacatatttaaaaaatgatttaagattGATGATGTTAAATATAGGGCTTTTTCTATTGGTAATCATGCAAAAGCAATATATTAAAATTGTATGAACAAATGGCTGTAAAATCTGGAGCAATTgtaaagtttaaattttttttttcaaagcatcattgaaaaataaaataaagaaagatgGAATGCAG
>TCONS_00075118
GAAGTGATGAAATTAGAGCGCACAAGTATTTAATTGACACAGAGAGCGCCAGCCCGTGTTTTGAGTCTGCTTCATCCCTGCGCTCTGCTCCAGGTCATGGCTTTTAGAGATGGAGAGAGGGTGAGGAAAGAATGAAAAGTGAACCGAGAGAAAGGATCTGAAAGTGCAATTTCCTCGTGCACATGTGGGAACTCAATTCTGCTTGGCCGACTCTTCTTAAACCTGTACGTGATGAATGAGTGAAGTTATAAAGCTGAAGCAAACATGTTTTTGGATGTTAAAAGACTTTCTCCTATCCATGCTTAATGTGGAAAGACAACTGTGAGCAAGCAATTTGTTGGCCGATTTCCCTAGAGAGTGTAAATAGCGTCTGGCAGAGCTAGTGCAACAAGAATttcacaatttagcttatttttttgttacacatatttaaaaaatgatttaagattGATGATGTTAAATATAGGGCTTTTTCTATTGGTAATCATGCAAAAGCAATATATTAAAATTGTATGAACAAATGGCTGTAAAATCTGGAGCAATTgtaaagtttaaatt

Function

GO:

id name namespace
GO:0048729 tissue morphogenesis biological_process
GO:0048731 system development biological_process
GO:0016070 RNA metabolic process biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0048513 animal organ development biological_process
GO:1990399 epithelium regeneration biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0035295 tube development biological_process
GO:0009611 response to wounding biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0060429 epithelium development biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0048568 embryonic organ development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0048589 developmental growth biological_process
GO:0048596 embryonic camera-type eye morphogenesis biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0031076 embryonic camera-type eye development biological_process
GO:0040007 growth biological_process
GO:0070654 sensory epithelium regeneration biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0048048 embryonic eye morphogenesis biological_process
GO:0032502 developmental process biological_process
GO:0007417 central nervous system development biological_process
GO:0009790 embryo development biological_process
GO:0005730 nucleolus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0140110 transcription regulator activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00075117 False 3328 lncRNA 0.37 1 26028731 26032058
TCONS_00074900 False 806 lncRNA 0.39 3 26028905 26032109
TCONS_00075118 True 558 lncRNA 0.38 2 26029550 26032058

Neighbor

gene id symbol gene type direction distance location
XLOC_037157 gtdc1 coding upstream 114747 25840720 ~ 25913984 (+)
XLOC_037158 CR925716.1 coding upstream 172002 25856613 ~ 25856729 (+)
XLOC_037156 NA coding upstream 190982 25565740 ~ 25837749 (+)
XLOC_037155 itm2bb coding upstream 682148 25330905 ~ 25346583 (+)
XLOC_037154 lrch1 coding upstream 857319 25096500 ~ 25171412 (+)
XLOC_037160 arglu1a coding downstream 54026 26086135 ~ 26096626 (+)
XLOC_037161 efnb2a coding downstream 71705 26103814 ~ 26127305 (+)
XLOC_037162 NA coding downstream 152979 26185088 ~ 26191424 (+)
XLOC_037163 si:dkey-111i23.1 coding downstream 167515 26199624 ~ 26504452 (+)
XLOC_037164 NA coding downstream 539120 26571229 ~ 26574876 (+)
XLOC_037153 NA non-coding upstream 948426 25079163 ~ 25080305 (+)
XLOC_037152 BX323457.2 non-coding upstream 954532 25073539 ~ 25074199 (+)
XLOC_037151 BX323457.3 non-coding upstream 961001 25066661 ~ 25067730 (+)
XLOC_037165 NA non-coding downstream 571954 26604063 ~ 26795421 (+)
XLOC_037166 NA non-coding downstream 662714 26694823 ~ 26697305 (+)
XLOC_037167 FP101883.1 non-coding downstream 864676 26896785 ~ 27225134 (+)

Expression


Co-expression Network