XLOC_037161 (efnb2a)


Basic Information

Item Value
gene id XLOC_037161
gene name efnb2a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 26103814 ~ 26127305 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073161
ATGGGCGACTCTTTGTGGAGATATTACTTTGGAGTTTTAGTGATCGCGTGCAAGGTGAACCTGTCCCGCGCGCTCATCCTGGACTCCATATACTGGAACACCACGAACACCAAGTTTGTGCCAGGACAGGGTCTGGTGCTGTATCCGCAGATTGGGGATAAGATGGACATAGTTTGCCCACGTGTGGAAGGTGGTTCAATGGAAGGAGTGGAGTATTATAAACTCTATATGGTTCCTCTGGAACAGCTAAAGTCCTGTCAGGTCACAAAAGCAGACACGCCTCTACTCAACTGCGTCAAGCCAGACCAGGACGTCAAATTCACCCTCAAATTCCAGGAGTTCAGCCCAAACCTTTGGGGCCTGGAGTTCTTCAGAGGGAAAGACTACTACATTATCTCTACATCTAATGGAACAATGGAAGGGCTGGATAATCAGGAAGGAGGGGTGTGTAAAACCAAGTCGATGAAAATCATCATGAAGGTTGGACAAAACCCCTCTGATCCCATTTCCCCCAAAGACTACCCTACCAGTTACCCTCCCAAACACCCTGACTTAGGGGGCAAGGACAGCAAATCGAATGAAGTACTTAAGCCAGATGCATCTCCTCATGGGGAAGATAAGGGAGATGGAAATAAATCCTCATCAGTCATTGGCTCAGAGGTGGCCCTGTTTGCCTGCATCGCCTCAGCAAGcgtcatcgtcatcatcataatcatcatgcTAGTTTTCCTTCTCCTGAAGTATCGACGACGTCATCGCAAACACTCTCCTCAACACGCCACCACGTTGTCACTCAGCACATTAGCCACGCCCAAGAGGGGCGGCAGCGGCGGCAACAACAACGGCTCAGAGCCGAGCGACATCATCATCCCACTGCGGACTGCTGACAGCGTCTTCTGCCCGCATTATGAGAAAGTGAGCGGCGATTACGGACACCCTGTTTACATCGTACAGGAAATGCCGCCACAGAGCCCAGCAAACATCTATTACAAGGTGTGAAAATGGACACGCTATTTTTTCCCGGACATTTTAACTCTAACCCCTCACATGCCCCTCGATGAACCCCCAGTTGGCGGCATCGATGCCTGAGCTCACCCTCGTTCTGCCccctcttattttattttgttgttcttgtttattttacattattactcTCAGTATAGATGTTGCTGATGGTGGAGTAACACTCCTGATTCGCTGCTCTTGCACCTGCAAAAACGAGACAAACTAATAGACAAATGACAAAAATGGAAACCCTCCGGGGGGACTGATGTGCACTATAATGGATACTATAGTGTGTGTACGAGGAAGCGTGTGTGAACGAACGGGGGAGAGGGGGGTTGAGAGGGTGGGCACGAAAAGAGAGGCCAAGAAAACGattcttcctctttttttccACTACATCATCTCCCTTAAGGACACAACATGCGGAGATGAAGAGAAGCGGCGTGTATCACACAACCACAAATAAGAACTTGAGCTGTTTATTTAGCTCGGCCGATCGGCTGATCCGTCACAAAACAGGAAGTGAACACAGCCCATTGGTTAGAGGAAGTGGATTTATTGAGGATGCTCTCCGGAGCGTAATGTTGGACATTTGAATGGACATCATCTGTTTTTGCACGTTCACTCGTACTGTTTTCATTTACGTTAGCTCTCCTCATTTGCTCACCTCTACAAAACGGCTCACCATGTTTTACTTGAAGTCTTTTTGTATGGTCATTCGTCTTACTTGCATTTCTTTCTGTCATTCCCAGTGCAGTCCACTTTGCAGATTTGTTTGGTAGAAGATTAATAGGTATCGTCATAGATATCCTTTTGTGCTGGTTTATGTGCCGTTTAGTAGCGtggaagacacacacacactcacaaacacatttcATTGCATTTCACATACATCCGCTGCCGAGGCTGGAAAAACGAGACATAATGAGAGAACGTCAATATTTGGTACAGTTGCTGTCCTGTTAACAGCTGGGAAGGTGGAGGACTCACATGAACACTTTAGCAGCACTTTGAAAGCCTCAACACCTTGCCCGATGGAgtaaaaatgcatcaaaacagACAGAGATAGTAGGGAGCGAATTGCTCAAGATTTATTAGCAAAATTGGTCATTTTTGACACAAAATGGCCGCCTTTCCCAGCCATGTTGCTGCAGAGGTTCCTGTTTTTCTAGTATTGCTGCCATCACAAACATACACTCGTTCACCGGTGGCCAGTGGAAAAGAGCTCTATTTTTTTGCTCAGAAGCACAGGGACATGGAATAATATCCCGATTCTTTAGTTTTGAATGAAACAAGATTTCATTAGCCTTTCCTTATGGATTCGTCGAGCTCTCTATATGAAAAATGATTGCACATAGAACCCATTTTTATGATAGCATGCAGACAGGTCAGTGTGAAACAGCAAGAATATGAATAATTTATGGCCAATCTGCACATTATGCAACTTTCTTTTTCGTTTACAGATATTCCTCCACCTCGCCATTTGCCTTTTTCCATCGATCCCGACACGAATAGCTGCCTTTCgaccacaaacaaacacacatatacatacccGCACAAAAAAGCACATGCGCTCATGGCCAGGGAAGGGGCGGCTTGGGAAGGAGCCCTCAGGGAAAACAGCATGTTGGGTTTTAAAATAGCCGAAAGGAATGAGAGGGAAGGGCCAGAAACGGACCAAAGGAAGGGCACGTCTAACAGAGTCCTGACTAAACCAACTTCTCCAGCCTGCCTGTCTCAGTTGATGAAGCTCAGATGTGCTCTGAGTTGAAATTAGGCCCCTTAATCTGGAAGGAAAGCAGTAGACGTGGGTTAGCAAGCATACCAGATGAGAACGAGCAGAGGCTAAATGTAGTAAATTGCATGAAATGGGATCTTTCGGGCTCAAATTGTGGGAGGTTTCTGGAGGGGAAaaccaaaaaaagaagaagagaaaaacacatTATGATCGATGGAGGTCACAAGTGGACCTAGCTTGCGCTTTAGAGAGGAAGTCACCAAGCAGAGGCCAGCGTATCCCATAACCAGCAACTCCCAGAAGATTTACGTGTGTCGTTATTTGTGAGCAATGCCAGCCTGTAGATGGTCAAAcccatttgtttttttgtttttctcacaTTAAAATCGCTCACCTACGGTGGACTTTGAGAGATGTCCACTGGCTGACTGTGGACTTCCACAGTGGCACATTACCTGTTCATCCATATTGTTTTCACTTGTTCATGGAGGTTCTTGAATCTCACCGAGAAGCCAAGCCTTGTGTGATCGGAGCTTTGTGCCTCTGTAAGAGGCCACAAAATCTGCAAatatgcaatttttatttatttttataacaattgagaaaaaaaaagatgatatacGTTCACCTATGGAAAAGTGTTCTTAACCACTGAAAATTAAATGATACAATACAGCATACGAAAACACTACAACCCcggtgtgttattattattattattattactttattttttactttgtgcTGTAGGTTCGAGGTAAACTGTGAAACATgaacacttttacacacacacacacttacatacataTTGAAGACTGAGCAGTTTTAaactctaaaacacacacacacacaaacatacatacacacacagatactacaaaaaactacaaacatgttGCTGTTTGGTTGCTGTCCCATATGGGCTAAATATGACAATCTCCTTAGTTTCTTCGAATCCGAAGACACTTTCCCGGCAAGCAGGTTGCAAACGTTCCCGTAACATTTTAGGAGCGGTAGGACTTAACTAGTAGCGTAAGATGTTGCACCGATGTGGGCGGAAGGTTTGCGCAAAAGCAGGGACAAGTGTCTTCGGGCCACTGTAAAATGCCTTGCTTGTATGGTCACCCTGAGTTCACAAGACTCTAGTTTTTGCACCGTACATCTGTAGGTAAGAGGCTGTAAATATGTTATTGTTTGTATTGTATATGGATCCCCGGTTGTTACGATAGCCTTATTCTCACATTtctagcaaataaaaaaaaagttaaggaaaaaaaaacatgaatcacttCAGTTAAGAGAGCATACTAATTTTTTTGGTAAATAACTTGTGTAAATATTGACGACGAACCCAATAAATCGTTTTTTATAAACTCTTAAGTAAGATGTTTTGTATAGAATTGGAATTTTTTGCTATGTATTTTAGCTAGCACTCGTCAGACCCCTCCCACTCAACCCTTTTGCACTGTTCCCAATGGCGATCTggtataaaaatgaaaatgagataGAGAATTGCCAAACTGACTGCTTGCTGCATATTTGTGCCATACGTGTGTACCatagatatttatttaattagttcttTTCGTTTcttctttgtttgtttctgttggATTTTTTTCTACCCATTTTGTACGCAACCTCAGTATTACCATTTGAGTTTTTATCCCCCCGACCTCTCCATCTCCTGTAATCTTTCTGTTGATATCGTTTCCCGATGCGCCCGTTTTCTCTCGCAGTAAGATCTGGTCAGGACGTGCAAACCTTATACAAGTCATAGAAATGAAATGGCACACATTCCACCAGTCTGTTACAAACTGAAAATGtttttcaataaaatgtttttcctaTGGAA
>TCONS_00073162
GGGGTGTGTAAAACCAAGTCGATGAAAATCATCATGAAGGTTGGACAAAACCCCTCTGATCCCATTTCCCCCAAAGACTACCCTACCAGTTACCCTCCCAAACACCCTGACTTAGGGGGCAAGGACAGCAAATCGAATGAAGTACTTAAGCCAGGTACGTCACTCACTTTATCACCTCACACACCTTTAAGGGGACGCTTTCTGATTCATCAGTCTCTCTGCCGTTGCATTGGTTTTTTGCTGAGCAAGTGCCAGTCCTCTGTCACAACGGCATGCACACTGATTCGTTCTCATAAAATCCGTCTGACAAGCAAACCATTAATGTGACAGAGCAAGACGGACGTGCTGGAATGCATTCGTTTGTAGAAGTCAACTTCTTCTCCCTCTGTGTAGAAACATATGGACATCAGAGTCTTAGGTGTAATAATGCACTTGTACTACAGCCTTAGTGTGAGTGTGAGCTGCTCATCTGCTCTGCCAACCCAGAGACGAAGTCAGTGAAGTCCAAAATCCAAAGGTCACCCTGTCCGCAGC
>TCONS_00073163
GTGTTTTGCAGACCCCTCTGATCCCATTTCCCCCAAAGACTACCCTACCAGTTACCCTCCCAAACACCCTGACTTAGGGGGCAAGGACAGCAAATCGAATGAAGTACTTAAGCCAGATGCATCTCCTCATGGGGAAGATAAGGGAGATGGAAATAAATCCTCATCAGTCATTGGCTCAGAGGTGGCCCTGTTTGCCTGCATCGCCTCAGCAAGcgtcatcgtcatcatcataatcatcatgcTAGTTTTCCTTCTCCTGAAGTATCGACGACGTCATCGCAAACACTCTCCTCAACACGCCACCACGTTGTCACTCAGCACATTAGCCACGCCCAAGAGGGGCGGCAGCGGCGGCAACAACAACGGCTCAGAGCCGAGCGACATCATCATCCCACTGCGGACTGCTGACAGCGTCTTCTGCCCGCATTATGAGAAAGTGAGCGGCGATTACGGACACCCTGTTTACATCGTACAGGAAATGCCGCCACAGAGCCCAGCAAACATCTATTACAAGGTGTGAAAATGGACACGCTATTTTTTCCCGGACATTTTAACTCTAACCCCTCACATGCCCCTCGATGAACCCCCAGTTGGCGGCATCGATGCCTGAGCTCACCCTCGTTCTGCCccctcttattttattttgttgttcttgtttattttacattattactcTCAGTATAGATGTTGCTGATGGTGGAGTAACACTCCTGATTCGCTGCTCTTGCACCTGCAAAAACGAGACAAACTAATAGACAAATGACAAAAATGGAAACCCTCCGGGGGGACTGATGTGCACTATAATGGATACTATAGTGTGTGTACGAGGAAGCGTGTGTG

Function

symbol description
efnb2a Predicted to enable ephrin receptor binding activity. Acts upstream of or within several processes, including angioblast cell migration involved in selective angioblast sprouting; nervous system development; and optic vesicle morphogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in several structures, including brain; germ ring; hindbrain neural keel; immature eye; and vasculature. Orthologous to human EFNB2 (ephrin B2).

GO:

id name namespace
GO:0001756 somitogenesis biological_process
GO:0030154 cell differentiation biological_process
GO:0048514 blood vessel morphogenesis biological_process
GO:0050920 regulation of chemotaxis biological_process
GO:0003404 optic vesicle morphogenesis biological_process
GO:0002042 cell migration involved in sprouting angiogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0001525 angiogenesis biological_process
GO:0021654 rhombomere boundary formation biological_process
GO:0001568 blood vessel development biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0048013 ephrin receptor signaling pathway biological_process
GO:0008039 synaptic target recognition biological_process
GO:0007399 nervous system development biological_process
GO:0007411 axon guidance biological_process
GO:0007412 axon target recognition biological_process
GO:0007155 cell adhesion biological_process
GO:0035475 angioblast cell migration involved in selective angioblast sprouting biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0046875 ephrin receptor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-990415-67 Predicted to enable ephrin receptor binding activity. Acts upstream of or within several processes, including angioblast cell migration involved in selective angioblast sprouting; nervous system development; and optic vesicle morphogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in several structures, including brain; germ ring; hindbrain neural keel; immature eye; and vasculature. Orthologous to human EFNB2 (ephrin B2).

Ensembl:

ensembl_id ENSDARG00000020164

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073161 False 4598 mRNA 0.43 5 26103814 26127305
TCONS_00073162 False 534 lncRNA 0.47 2 26120881 26121858
TCONS_00073163 True 840 lncRNA 0.49 2 26121363 26124026

Neighbor

gene id symbol gene type direction distance location
XLOC_037160 arglu1a coding upstream 7188 26086135 ~ 26096626 (+)
XLOC_037159 NA coding upstream 71705 26028731 ~ 26032109 (+)
XLOC_037157 gtdc1 coding upstream 189830 25840720 ~ 25913984 (+)
XLOC_037158 CR925716.1 coding upstream 247085 25856613 ~ 25856729 (+)
XLOC_037156 NA coding upstream 266065 25565740 ~ 25837749 (+)
XLOC_037162 NA coding downstream 57783 26185088 ~ 26191424 (+)
XLOC_037163 si:dkey-111i23.1 coding downstream 72319 26199624 ~ 26504452 (+)
XLOC_037164 NA coding downstream 443924 26571229 ~ 26574876 (+)
XLOC_037165 NA coding downstream 476758 26604063 ~ 26795421 (+)
XLOC_037166 NA coding downstream 567518 26694823 ~ 26697305 (+)
XLOC_037153 NA non-coding upstream 1023509 25079163 ~ 25080305 (+)
XLOC_037152 BX323457.2 non-coding upstream 1029615 25073539 ~ 25074199 (+)
XLOC_037167 FP101883.1 non-coding downstream 769480 26896785 ~ 27225134 (+)

Expression


Co-expression Network