Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00073163 |
| length | 840 |
| lncRNA type | retained_intron |
| GC content | 0.49 |
| exon number | 2 |
| gene id | XLOC_037161 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007120.7 |
| NCBI id | CM002893.2 |
| chromosome length | 56459846 |
| location | 26103814 ~ 26127305 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0001756 | somitogenesis | biological_process |
| GO:0030154 | cell differentiation | biological_process |
| GO:0048514 | blood vessel morphogenesis | biological_process |
| GO:0050920 | regulation of chemotaxis | biological_process |
| GO:0003404 | optic vesicle morphogenesis | biological_process |
| GO:0002042 | cell migration involved in sprouting angiogenesis | biological_process |
| GO:0007275 | multicellular organism development | biological_process |
| GO:0001525 | angiogenesis | biological_process |
| GO:0021654 | rhombomere boundary formation | biological_process |
| GO:0001568 | blood vessel development | biological_process |
| GO:0009952 | anterior/posterior pattern specification | biological_process |
| GO:0048013 | ephrin receptor signaling pathway | biological_process |
| GO:0008039 | synaptic target recognition | biological_process |
| GO:0007399 | nervous system development | biological_process |
| GO:0007411 | axon guidance | biological_process |
| GO:0007412 | axon target recognition | biological_process |
| GO:0007155 | cell adhesion | biological_process |
| GO:0035475 | angioblast cell migration involved in selective angioblast sprouting | biological_process |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0046875 | ephrin receptor binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-990415-67 | Predicted to enable ephrin receptor binding activity. Acts upstream of or within several processes, including angioblast cell migration involved in selective angioblast sprouting; nervous system development; and optic vesicle morphogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in several structures, including brain; germ ring; hindbrain neural keel; immature eye; and vasculature. Orthologous to human EFNB2 (ephrin B2). |
| ensembl_id | ENSDART00000141584 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00073160 | lncRNA | upstream | 25177 | 26086236 ~ 26096186 (+) | True | XLOC_037160 |
| TCONS_00074900 | lncRNA | upstream | 89254 | 26028905 ~ 26032109 (+) | False | XLOC_037159 |
| TCONS_00075117 | lncRNA | upstream | 89305 | 26028731 ~ 26032058 (+) | False | XLOC_037159 |
| TCONS_00075118 | lncRNA | upstream | 89305 | 26029550 ~ 26032058 (+) | True | XLOC_037159 |
| TCONS_00073149 | lncRNA | upstream | 295151 | 25775816 ~ 25826212 (+) | False | XLOC_037156 |
| TCONS_00074901 | lncRNA | downstream | 61062 | 26185088 ~ 26191424 (+) | True | XLOC_037162 |
| TCONS_00074902 | lncRNA | downstream | 447203 | 26571229 ~ 26574876 (+) | True | XLOC_037164 |
| TCONS_00074903 | lncRNA | downstream | 480037 | 26604063 ~ 26626970 (+) | False | XLOC_037165 |
| TCONS_00073168 | lncRNA | downstream | 480037 | 26604063 ~ 26795421 (+) | False | XLOC_037165 |
| TCONS_00075119 | lncRNA | downstream | 480299 | 26604325 ~ 26671302 (+) | False | XLOC_037165 |
| TCONS_00073159 | mRNA | upstream | 24737 | 26086135 ~ 26096626 (+) | False | XLOC_037160 |
| TCONS_00073157 | mRNA | upstream | 207379 | 25853052 ~ 25913984 (+) | True | XLOC_037157 |
| TCONS_00073156 | mRNA | upstream | 209396 | 25840720 ~ 25911967 (+) | False | XLOC_037157 |
| TCONS_00073155 | mRNA | upstream | 284916 | 25832329 ~ 25836447 (+) | True | XLOC_037156 |
| TCONS_00073154 | mRNA | upstream | 285154 | 25777270 ~ 25836209 (+) | False | XLOC_037156 |
| TCONS_00073167 | mRNA | downstream | 75648 | 26199674 ~ 26293601 (+) | True | XLOC_037163 |
| TCONS_00073173 | mRNA | downstream | 1205614 | 27329640 ~ 27337185 (+) | True | XLOC_037171 |
| TCONS_00073174 | mRNA | downstream | 1215479 | 27339505 ~ 27344683 (+) | True | XLOC_037172 |
| TCONS_00073175 | mRNA | downstream | 1224783 | 27348809 ~ 27349361 (+) | True | XLOC_037173 |
| TCONS_00073176 | mRNA | downstream | 1228272 | 27352298 ~ 27355281 (+) | False | XLOC_037174 |
| TCONS_00073158 | other | upstream | 264634 | 25856613 ~ 25856729 (+) | True | XLOC_037158 |
| TCONS_00073146 | other | upstream | 783636 | 25330971 ~ 25337727 (+) | True | XLOC_037155 |
| TCONS_00073141 | other | upstream | 1041058 | 25079209 ~ 25080305 (+) | True | XLOC_037153 |
| TCONS_00073140 | other | upstream | 1047164 | 25073539 ~ 25074199 (+) | True | XLOC_037152 |
| TCONS_00073139 | other | upstream | 1053633 | 25066661 ~ 25067730 (+) | True | XLOC_037151 |
| TCONS_00073164 | other | downstream | 75598 | 26199624 ~ 26293589 (+) | False | XLOC_037163 |
| TCONS_00073165 | other | downstream | 75598 | 26199624 ~ 26411378 (+) | False | XLOC_037163 |
| TCONS_00073166 | other | downstream | 75633 | 26199659 ~ 26504452 (+) | False | XLOC_037163 |
| TCONS_00073169 | other | downstream | 570843 | 26694869 ~ 26697305 (+) | True | XLOC_037166 |
| TCONS_00073172 | other | downstream | 1158296 | 27282322 ~ 27282436 (+) | True | XLOC_037168 |
