RNA id: TCONS_00073168


Basic Information

Item Value
RNA id TCONS_00073168
length 734
lncRNA type lincRNA
GC content 0.46
exon number 3
gene id XLOC_037165
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 26604063 ~ 26795421 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCAATCTAGTCGAGAGCAAGTGAAAATAATCGGAAGGAAGTGCGATGATGAGgcagaataaaaaaagaagctttttttctcccccttttttttttgcttgtttgtgaGCTTCACTCATTCAATCATGTGCAATTTGCCAGGGTAATTGAGGTGGGGCGAATAGGAAAGAGTTAAGCAATTAAGAGTTCACGGGTCGCAGCTGTGTTCTGACACGCCATCATTAGTTTTCTGACGATCTGCTTTTTTTTGTTTCCTCCCTCAGGTTTTCTCAGGCCAGGAGAGAGTTTCAGATTAGAACATCTGGAGTTTCATGTTGAAACGGCATCACTTTCCCACCGAGACCCGAGTGAAGCCATTAAGGCCAATGAAGACAGAAGAGCAAGTTTGACTGCGCCGACACACGCCGTGTTTCGCGTGGCGGATGTGTGAAGAATGATGAAGAGAGCGACGAGAGAAAGACAGCGAGAGGGAAGGGCTGAGGGAGGATTGAATTAGGGCTGACTGAAGCGTGATGAGAGAAAACAGAGGGACCGATAATGAAGGAAAATAAACCTTATTGGTCGACTGGCTGGGAGGACAAAGAAGTGAGGGAGTTGATGGACACAGCTAGAAAAATAGCTGCCCTCACACAGAAATGCCGTCACTGCAGAAATCCTGGCTTTTGCTGGAAGACTTGCACATGATTTCATACAGAATGATGTTGTTTTACCTACTACATGTGGGGAAAATTCACC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000194887

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00074902 lncRNA upstream 29187 26571229 ~ 26574876 (+) True XLOC_037164
TCONS_00074901 lncRNA upstream 412639 26185088 ~ 26191424 (+) True XLOC_037162
TCONS_00073163 lncRNA upstream 480037 26121363 ~ 26124026 (+) True XLOC_037161
TCONS_00073162 lncRNA upstream 482205 26120881 ~ 26121858 (+) False XLOC_037161
TCONS_00073160 lncRNA upstream 507877 26086236 ~ 26096186 (+) True XLOC_037160
TCONS_00073170 lncRNA downstream 101364 26896785 ~ 26902062 (+) False XLOC_037167
TCONS_00073171 lncRNA downstream 101364 26896785 ~ 27008663 (+) False XLOC_037167
TCONS_00075122 lncRNA downstream 101367 26896788 ~ 26968971 (+) False XLOC_037167
TCONS_00075123 lncRNA downstream 101367 26896788 ~ 27033924 (+) False XLOC_037167
TCONS_00075124 lncRNA downstream 101367 26896788 ~ 27075414 (+) False XLOC_037167
TCONS_00073167 mRNA upstream 310462 26199674 ~ 26293601 (+) True XLOC_037163
TCONS_00073161 mRNA upstream 476758 26103814 ~ 26127305 (+) False XLOC_037161
TCONS_00073159 mRNA upstream 507437 26086135 ~ 26096626 (+) False XLOC_037160
TCONS_00073157 mRNA upstream 690079 25853052 ~ 25913984 (+) True XLOC_037157
TCONS_00073156 mRNA upstream 692096 25840720 ~ 25911967 (+) False XLOC_037157
TCONS_00073173 mRNA downstream 534219 27329640 ~ 27337185 (+) True XLOC_037171
TCONS_00073174 mRNA downstream 544084 27339505 ~ 27344683 (+) True XLOC_037172
TCONS_00073175 mRNA downstream 553388 27348809 ~ 27349361 (+) True XLOC_037173
TCONS_00073176 mRNA downstream 556877 27352298 ~ 27355281 (+) False XLOC_037174
TCONS_00073177 mRNA downstream 558993 27354414 ~ 27355281 (+) False XLOC_037174
TCONS_00073166 other upstream 99611 26199659 ~ 26504452 (+) False XLOC_037163
TCONS_00073165 other upstream 192685 26199624 ~ 26411378 (+) False XLOC_037163
TCONS_00073164 other upstream 310474 26199624 ~ 26293589 (+) False XLOC_037163
TCONS_00073158 other upstream 747334 25856613 ~ 25856729 (+) True XLOC_037158
TCONS_00073146 other upstream 1266336 25330971 ~ 25337727 (+) True XLOC_037155
TCONS_00073172 other downstream 486901 27282322 ~ 27282436 (+) True XLOC_037168
TCONS_00073183 other downstream 924846 27720267 ~ 27733587 (+) False XLOC_037178
TCONS_00073189 other downstream 987083 27782504 ~ 27787376 (+) True XLOC_037180
TCONS_00073190 other downstream 1022504 27817925 ~ 27822574 (+) True XLOC_037182
TCONS_00073191 other downstream 1039024 27834445 ~ 27844628 (+) True XLOC_037183

Expression Profile

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