RNA id: TCONS_00073176


Basic Information

Item Value
RNA id TCONS_00073176
length 2984
RNA type mRNA
GC content 0.39
exon number 1
gene id XLOC_037174
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 27352298 ~ 27355333 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGAGGCCAGAACAAGAAGATCATAAGCTATGAAGATTATTGAGGAACTGAAGATGGgacttttttttgcattcttCATCCTATTTCTGAAGACTTCATATGTTTGTTCTTGGCTTGCTGGAAAATGTCATATTGAAAGTGACGGGGAAGAATTTTCTTTTAGCACATCCTCTCCTCGAAAACGGAACACTACTGTATGCCGTAGTGTCACTGACATGAAAGAAGACCTTCGAGGACTTCCTGCAAACTTACAGAATCTCATTGTTCAGACGGATCTAGGCTATCATGGTGTCCTGGCTCCAAACTCATTCTTACGTTTTGGTTCTTTGGAAAATCTTGAAATTGTGGGATGTTTATCAGAGGTCCCTCCAGAAGCTTTTAATGGATTGACGAATGTGACTACACTAACACTATCATGTTCCCAACAATGCACTGAGGTAGCTTTTGATTTCAGTCGCCTGACCTCACTTACCAGTCTGTCTCTTTCAGACTATAGTTTGTCATTATTGCCatcaaatgtttttgaaaagaTTCCACAGTTGCGATGGCTACATTTATGCAGTGAGTGTTTGAAGGATTTATCTGAGGTTTTGTGTCGGcttaaaaatgttaaatcatTGAAGTACCTTGGTTTAGGTAATACAATGTTAACAAGACTTCAATACCCAAACTGCTCAGTTTTCAACGTCTCTGAAATATCGACTAAGTTTAATATTGAAAGAGCGGATTTGCTTTTGGGAAAGTTAGAGCATGTAGATGAGGGGGCTTTAAAAGTTTTTGGAAAGCTCTCCAGGTTGTATTTTACTGTTTCAAGCAAAAATTTTCTGAGGGATCTTTCTTTAATTGGAGTACATCAAATTAGTGTAATAATTGCCACAGTGGATGTACTTAATGTTGACGATTTGTGTGTAGCAGCAAAGTTATATTCAGTTAAGTCTGTAGATGTTGATTATGATACAATTAACTTGTCACTGACTTCTAAAATTTCAGATGGCTGTAAACAAATTGGTTACATTATGCTTGAAAATAACATATTTGGAAAGACTGTCAACCTCTTAGATGTAAATTCTCTCTTCCAGATTTTCAGCAACCTCACTTCTGTTACCATAGATAAGCATGTGCTCAGATCAAATGATTTTCAATCTCTTTGTGCTTCATTTCCACAGACGGTCAAAAAGATTTCTGATATGGTGCTACGAATTATTAGGATAGATAAGATAGTTTCTCATCAGTTTATGTGTTTTGTAAATCTTAAAACTTTGAAGTTAGCAATGAGCAAATTTTCTGTCATAGAAGATTTTGCTTTCATTGGATTGAACAAACTGAAAGAGTTAAACCTCCACAGcaacaaaatatcttctattcATCAACACACATTCAGTGGCTTACATGAACTGAGGGTTCTGGATCTGAATGAAAATCCATTATTTCACATTGAGCCAGAATCATTTAGACATCTTATTAATCTTAGGACACTTCTATTGGGAGATCTGAACTTCCCTCCTAACATGTCACTGATCAAGCTGCATTTATCTGACATATTTCGAGAAATTCCACGCAATTTGAGTAATGTTTTCATTAGTTCAGGACTGAGACCAATGCATCTTGTGATCGGGAGTAATACTACACTGAATAATGGGCTAAACTTGCACATCAAAGGTCAATATGTGATTGTTGAGGACTGCAATAGTTTACTTTTAACATCTGTAGTCACACTTCAGATAAATGCTGCATATATGATCTGTGAAAATGAATTCATTGGGAAATATGTGCCATCAGTCGTCAGTCTGAAATTTGAGTCAATGTTCTCTGACAATATTGGAGACTTGTCTGTAATCAATCAGCTTGTTCATTTGAAAACCCTAAAACTGGAAAACATTGATTTAACAAATCAGCCGAACACGGGCATAATGTTTCACAATCTGACAAAACTGGAGACTCTGATTCTGGCAAATTGCAGATTATTATTTCTGGATGGAAGTCTGACCAAAGACTTAAAGGCACTGACAACACTAGTGCTATTACCCAAAGATACTGTCAATATTCTACAAACATTTGCTGTTCATCTCATTCAATTGGAGTTTGTCTGTTTTTATAGATTGGGTCTGTACTGCAGTTGTGATAATGCATGGCTGGTCTCGTGGATAAGGGACAACAGGAAGGTGGAGGTTGACATGTCAAACCCCAGCATGCATGATTTGCAGTGTTTTTTTGGCAATGAATTTGACCAACTCAACTTTGTCAGCTATGCCAAGGAGAACTGCTCATTTGACCTTGACTTTGTGTTCTTCGCCTGTTCTTCTGTGTTTTTGTGCATCTTTATTGTTGTGGTCCTGATGTATAAATTTGTAGGCCAGTACTTCAAGCCGTTCTATCACATCGCCAATGGATGGTTTCGAGAGGCTTTGCGTATGAAGGAGAAACAGCAGTACCGCTATGATGCTTTCGTGTCTTACAGCGGTAAGGATGAGCACTGGGTCATAGAGGAACTTCTTCCAAACTTAGAGCAGCGCGGGCCTCCATTTCTGCGTCTCTGTCTGCACAGTCGGGACTTTCAGTTGGGACACGACATTGTGGAAAACATCACAGACAGCATCTACGCAAGTCGCCGGACTCTTTGTCTCGTCAGTCGCAACTACCTCAATAGCAACTGGTGCTCACTGGAGATGCAGCTGGCCACCTACCGGCTCCAGGTAGAACACAGAGACATTCTTATCCTGGTCTTCCTAGAAAACATTCCATCTCGCTTGCTTTCCTCCCATCACAGACTGGCCCGGCTGGTGAAAACTAGGACCTATCTGGATTGGCCACAGGAGCCGGAGATGCATGATGCATTCTGGGACAGGTTGTGGTGTAAACTGAGCTCTAATAAAGCCAACTAGACTTTCCTTCTGTTTATTGTAAAGTTGCTTAAGATAATTACAAACTTTCTTTTGCAAAGTGATCAATATTTCAGTAAACGTTCAATAGATTTGATGCTTAATC

Function

GO:

id name namespace
GO:0006954 inflammatory response biological_process
GO:0002224 toll-like receptor signaling pathway biological_process
GO:0007165 signal transduction biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0038023 signaling receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040220-6 Predicted to enable signaling receptor activity. Predicted to be involved in inflammatory response and toll-like receptor signaling pathway. Predicted to act upstream of or within innate immune response and signal transduction. Predicted to be located in cytoplasm and membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane.

Ensembl:

ensembl_id ENSDART00000124265

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075127 lncRNA upstream 2961 27348630 ~ 27349337 (+) False XLOC_037173
TCONS_00074907 lncRNA upstream 28583 27314951 ~ 27323715 (+) True XLOC_037170
TCONS_00074906 lncRNA upstream 50733 27300664 ~ 27301565 (+) True XLOC_037169
TCONS_00075126 lncRNA upstream 127164 27182702 ~ 27225134 (+) True XLOC_037167
TCONS_00074904 lncRNA upstream 276906 26896816 ~ 27075392 (+) False XLOC_037167
TCONS_00075128 lncRNA downstream 56050 27411331 ~ 27416223 (+) False XLOC_037177
TCONS_00075129 lncRNA downstream 56334 27411615 ~ 27416223 (+) True XLOC_037177
TCONS_00075130 lncRNA downstream 452246 27807527 ~ 27811141 (+) True XLOC_037181
TCONS_00074908 lncRNA downstream 773417 28128698 ~ 28130735 (+) False XLOC_037187
TCONS_00074909 lncRNA downstream 773826 28129107 ~ 28130735 (+) True XLOC_037187
TCONS_00073175 mRNA upstream 2937 27348809 ~ 27349361 (+) True XLOC_037173
TCONS_00073174 mRNA upstream 7615 27339505 ~ 27344683 (+) True XLOC_037172
TCONS_00073173 mRNA upstream 15113 27329640 ~ 27337185 (+) True XLOC_037171
TCONS_00073167 mRNA upstream 1058697 26199674 ~ 26293601 (+) True XLOC_037163
TCONS_00073161 mRNA upstream 1224993 26103814 ~ 26127305 (+) False XLOC_037161
TCONS_00073179 mRNA downstream 15959 27371240 ~ 27371879 (+) True XLOC_037175
TCONS_00073180 mRNA downstream 23733 27379014 ~ 27379721 (+) False XLOC_037176
TCONS_00073181 mRNA downstream 23912 27379193 ~ 27379739 (+) True XLOC_037176
TCONS_00073182 mRNA downstream 56221 27411502 ~ 27416612 (+) False XLOC_037177
TCONS_00073184 mRNA downstream 365147 27720428 ~ 27734078 (+) True XLOC_037178
TCONS_00073172 other upstream 69862 27282322 ~ 27282436 (+) True XLOC_037168
TCONS_00073169 other upstream 654993 26694869 ~ 26697305 (+) True XLOC_037166
TCONS_00073166 other upstream 847846 26199659 ~ 26504452 (+) False XLOC_037163
TCONS_00073165 other upstream 940920 26199624 ~ 26411378 (+) False XLOC_037163
TCONS_00073164 other upstream 1058709 26199624 ~ 26293589 (+) False XLOC_037163
TCONS_00073183 other downstream 364986 27720267 ~ 27733587 (+) False XLOC_037178
TCONS_00073189 other downstream 427223 27782504 ~ 27787376 (+) True XLOC_037180
TCONS_00073190 other downstream 462644 27817925 ~ 27822574 (+) True XLOC_037182
TCONS_00073191 other downstream 479164 27834445 ~ 27844628 (+) True XLOC_037183
TCONS_00073192 other downstream 481781 27837062 ~ 27838013 (+) False XLOC_037184

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU61126 True 2941 lncRNA 0.39 2 CI01000009 6215668 ~ 6244368 (+)