RNA id: TCONS_00074909


Basic Information

Item Value
RNA id TCONS_00074909
length 916
lncRNA type sense_over
GC content 0.45
exon number 2
gene id XLOC_037187
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 28103735 ~ 28130735 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTCTCAGCACTGAATAGCCTGACTACTACCTACACACTCCAGGCCAAGTGTGCTTGACTTTATTAGATAGATGTGAGGCTGGTCATCAGAGAGAGCGGATGAAGACCTCGTGCCTCAGACTGACACCATTGTGCCGTGATAATTGGATTCTCCCTGTGTGAATGGAGACTCTTTCACTGGCTTTTGTCAATGTAAAGATTGCTATTGTACCACAGGAAATGAAGCCTATGAATATGAAACAGACCTGTGATGATTCCGACATAAGACACTGGAACACCCGCACGACGCAACTCAAACCCCGCCCCACACAGCCGATTTCATTGGTCAATTTAAGGATCCTCACCTGTCTCTCTCCATCTGAGATACACCTTGGTCCTGTAGGGAACGCAGCGGTTTCCATGGGGACGCATAGCCACTCTGCTCTTCAAAAGCGGGCCAAGCAGAGGCAGAGGGGCCCTTTGTGTTGGAGAGGAAAGCGTGGAACAACGCTGGGCAGATGAAAGCCCTGCTATCCTTACGCCCAATCATAATTTAGTCATCAGCGCAGGAGCACAGAATCCAAATAGACACTGAAAACACAAACAGCGAAAAGGAGAGGCTCATGGGTCAAGATATGAGCAGGAGAGAGAGATGGGAGGCTGATATGAGGATAAATTTCAAAGAGATAAAGGAATAGTTGTGCTGTGGCTCaggcttttttttctctccatgtTGATGATCAATTCTCTGTGCTGTAGTTTGTGCTGAAATGATGGTGTCCACTTCCATCCAATTTGAAGAAATTATGATGCATCAACTACATTGTTCAGACCAAAAATAGCAACCTTGTTTATCAGAATGTATTTCATCTTTGTCTGTCAAGGGAACAGAAGTGGACAACAGATATGTTTGTTTACTGGTAGAATTAAAATTAG

Function

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0006099 tricarboxylic acid cycle biological_process
GO:0006102 isocitrate metabolic process biological_process
GO:0006739 NADP metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005777 peroxisome cellular_component
GO:0005829 cytosol cellular_component
GO:0005739 mitochondrion cellular_component
GO:0046872 metal ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0051287 NAD binding molecular_function
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor molecular_function
GO:0004450 isocitrate dehydrogenase (NADP+) activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
ko00020 Citrate cycle (TCA cycle)
ko00720 Carbon fixation pathways in prokaryotes
ko00480 Glutathione metabolism
ko04146 Peroxisome
ko05230 Central carbon metabolism in cancer

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075130 lncRNA upstream 317966 27807527 ~ 27811141 (+) True XLOC_037181
TCONS_00075128 lncRNA upstream 712884 27411331 ~ 27416223 (+) False XLOC_037177
TCONS_00075129 lncRNA upstream 712884 27411615 ~ 27416223 (+) True XLOC_037177
TCONS_00075127 lncRNA upstream 779770 27348630 ~ 27349337 (+) False XLOC_037173
TCONS_00074907 lncRNA upstream 805392 27314951 ~ 27323715 (+) True XLOC_037170
TCONS_00073202 lncRNA downstream 112889 28243624 ~ 28248981 (+) True XLOC_037190
TCONS_00075131 lncRNA downstream 210376 28341111 ~ 28344611 (+) True XLOC_037191
TCONS_00073203 lncRNA downstream 268589 28399324 ~ 28403146 (+) True XLOC_037192
TCONS_00075132 lncRNA downstream 458122 28588857 ~ 28590308 (+) False XLOC_037193
TCONS_00075133 lncRNA downstream 458155 28588890 ~ 28590308 (+) True XLOC_037193
TCONS_00073198 mRNA upstream 1083 28116079 ~ 28128024 (+) False XLOC_037187
TCONS_00073195 mRNA upstream 227501 27876146 ~ 27901606 (+) True XLOC_037185
TCONS_00073186 mRNA upstream 338702 27750490 ~ 27790405 (+) False XLOC_037179
TCONS_00073199 mRNA downstream 9354 28140089 ~ 28208549 (+) False XLOC_037188
TCONS_00073200 mRNA downstream 19540 28150275 ~ 28208549 (+) True XLOC_037188
TCONS_00073201 mRNA downstream 101787 28232522 ~ 28234444 (+) True XLOC_037189
TCONS_00073204 mRNA downstream 467842 28598577 ~ 28604451 (+) False XLOC_037194
TCONS_00073205 mRNA downstream 467872 28598607 ~ 28606714 (+) False XLOC_037194
TCONS_00073196 other upstream 190689 27938302 ~ 27938418 (+) True XLOC_037186
TCONS_00073191 other upstream 284479 27834445 ~ 27844628 (+) True XLOC_037183
TCONS_00073206 other downstream 501650 28632385 ~ 28632500 (+) True XLOC_037195
TCONS_00073213 other downstream 591341 28722076 ~ 28740924 (+) True XLOC_037198
TCONS_00073221 other downstream 1311758 29442493 ~ 29442609 (+) True XLOC_037204
TCONS_00073223 other downstream 1387504 29518239 ~ 29518355 (+) True XLOC_037206
TCONS_00073225 other downstream 1390007 29520742 ~ 29527021 (+) False XLOC_037207