RNA id: TCONS_00073186


Basic Information

Item Value
RNA id TCONS_00073186
length 888
RNA type mRNA
GC content 0.52
exon number 6
gene id XLOC_037179
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 27750490 ~ 27790405 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTACAGCTCAACAATGCGCATGCGCGGATGTGCGGAAGTGTTCGCAGCCCGATAACCAGCTGATAGATCAACAACCGAACAGCCATCGCCAAAAGAGCCACGACTGGCAACAACAGgattacaGACTAACTGCTGTCCTTGTGGACTAATAAAACGTTTGCAGTACTCCAGAAACGGAGTCCACTGCTTTGAACTGCTGCTTTCAGAGACGCTATCAGGGAGGACGGCCACCCTTCCTACATCATGAGTACCCGTGGGACAGGCAGGGCCAATGGGAACCTACCGCAGACCAAGATCTGCCAGTTTAAACTGGTGCTGCTGGGAGACATGGCCGTCGGCAAGTCCAGCCTGGTGCTGCGCTTTGTGAAGGGACAGTTTGATGAGTTTCAGGAGACCACCATTGGAGCTGCATTCTTGGCCCAGTCTGTTTGTCTGGACGACACTACAGTGAAGTTTGAGATTTGGGACACAGCCGGACAAGAGCGCTACCACAGCTTGGCTCCCATGTACTACCGTGGAGCCCAGGCAGCCATTGTAGTGTTTGATATCACTAAACCTGAAACATTTGAGCGAGCAAAAGCATGGGTGAAAGAGCTGCAGCGGCAGGCCAGTCCCAACATAGTCATTGCTCTTGCAGGAAACAAAGCCGATCTAGCAGACAAGAGACTTGTGGAGTATGAGGAAGCCCAGACATATGCAGAAGACACAGGTTTACTGTTCATGGAAACCTCTGCCAAGACTGCAATGAATGTAAACGAGTTGTTCCTGGCCATTGCAAAAAAGATGCCAAAAACAGACACCCAAAACCCTACGCATGCTGCGCGACACAGGGGCGTGAACCTGCAGGACCCAGACGCACAGTCCACTCGAAGCTGCTGTGAGAACTAA

Function

GO:

id name namespace
GO:0030100 regulation of endocytosis biological_process
GO:0006886 intracellular protein transport biological_process
GO:0006897 endocytosis biological_process
GO:0005768 endosome cellular_component
GO:0005769 early endosome cellular_component
GO:0030139 endocytic vesicle cellular_component
GO:0005886 plasma membrane cellular_component
GO:0012505 endomembrane system cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
ko04014 Ras signaling pathway
ko04144 Endocytosis
ko04145 Phagosome
ko04962 Vasopressin-regulated water reabsorption
ko05132 Salmonella infection
ko05152 Tuberculosis
ko05146 Amoebiasis
ko04131 Membrane trafficking
ko04147 Exosome
ko04031 GTP-binding proteins

ZFIN:

id description
ZDB-GENE-040426-2593 Predicted to enable GTPase activity. Predicted to be involved in endocytosis; intracellular protein transport; and regulation of endocytosis. Predicted to be active in early endosome; endocytic vesicle; and plasma membrane. Is expressed in pronephric duct; pronephric mesoderm; pronephros; telencephalon; and yolk syncytial layer. Orthologous to human RAB5B (RAB5B, member RAS oncogene family).

Ensembl:

ensembl_id ENSDART00000189279

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075128 lncRNA upstream 334267 27411331 ~ 27416223 (+) False XLOC_037177
TCONS_00075129 lncRNA upstream 334267 27411615 ~ 27416223 (+) True XLOC_037177
TCONS_00075127 lncRNA upstream 401153 27348630 ~ 27349337 (+) False XLOC_037173
TCONS_00074907 lncRNA upstream 426775 27314951 ~ 27323715 (+) True XLOC_037170
TCONS_00074906 lncRNA upstream 448925 27300664 ~ 27301565 (+) True XLOC_037169
TCONS_00075130 lncRNA downstream 17122 27807527 ~ 27811141 (+) True XLOC_037181
TCONS_00074908 lncRNA downstream 338293 28128698 ~ 28130735 (+) False XLOC_037187
TCONS_00074909 lncRNA downstream 338702 28129107 ~ 28130735 (+) True XLOC_037187
TCONS_00073202 lncRNA downstream 453219 28243624 ~ 28248981 (+) True XLOC_037190
TCONS_00075131 lncRNA downstream 550706 28341111 ~ 28344611 (+) True XLOC_037191
TCONS_00073184 mRNA upstream 16412 27720428 ~ 27734078 (+) True XLOC_037178
TCONS_00073182 mRNA upstream 333878 27411502 ~ 27416612 (+) False XLOC_037177
TCONS_00073181 mRNA upstream 370751 27379193 ~ 27379739 (+) True XLOC_037176
TCONS_00073180 mRNA upstream 370769 27379014 ~ 27379721 (+) False XLOC_037176
TCONS_00073179 mRNA upstream 378611 27371240 ~ 27371879 (+) True XLOC_037175
TCONS_00073195 mRNA downstream 85741 27876146 ~ 27901606 (+) True XLOC_037185
TCONS_00073197 mRNA downstream 313330 28103735 ~ 28129476 (+) False XLOC_037187
TCONS_00073198 mRNA downstream 325674 28116079 ~ 28128024 (+) False XLOC_037187
TCONS_00073199 mRNA downstream 349684 28140089 ~ 28208549 (+) False XLOC_037188
TCONS_00073200 mRNA downstream 359870 28150275 ~ 28208549 (+) True XLOC_037188
TCONS_00073183 other upstream 16903 27720267 ~ 27733587 (+) False XLOC_037178
TCONS_00073172 other upstream 468054 27282322 ~ 27282436 (+) True XLOC_037168
TCONS_00073169 other upstream 1053185 26694869 ~ 26697305 (+) True XLOC_037166
TCONS_00073166 other upstream 1246038 26199659 ~ 26504452 (+) False XLOC_037163
TCONS_00073165 other upstream 1339112 26199624 ~ 26411378 (+) False XLOC_037163
TCONS_00073190 other downstream 27520 27817925 ~ 27822574 (+) True XLOC_037182
TCONS_00073191 other downstream 44040 27834445 ~ 27844628 (+) True XLOC_037183
TCONS_00073192 other downstream 46657 27837062 ~ 27838013 (+) False XLOC_037184
TCONS_00073193 other downstream 46998 27837403 ~ 27840540 (+) False XLOC_037184
TCONS_00073194 other downstream 47381 27837786 ~ 27840540 (+) True XLOC_037184

Expression Profile

//