RNA id: TCONS_00073197


Basic Information

Item Value
RNA id TCONS_00073197
length 4322
RNA type mRNA
GC content 0.41
exon number 9
gene id XLOC_037187
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 28103735 ~ 28130735 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGAAAACATATGAAGGGAACTTTGGGTTCAGATCAGATATTGTACAACCTacgaaatattttttttcttgaaaccatgtttttatttatgaaaaaagcaAGTAGGCTAAAGTAATATACGATAAATCATGTTGAGTCAAGGACAAATACAAGTATTTGAATAGCTGAAAATTACAACACTTGACaactttaattaaaacatttcaaaacacaaacaaccTGTGTTTTAAACCAGATCCATAGCATCTAGCATCCTTGATAAATCAAACAGTGTGTGCAGAAGTGTTCTGCTGGTATCCCTGACTTGCTCTTTTATATTTGATTTGCTGTCAACAATAACAGAGTAACGAGGGGGAATGGggtttgttgtcattttcctgTGCAGTTAAAGAAATTGCAGTCTCTAGACACTGTGCATATAATAAGATTGACAATTTCGCTCGCCTGTGAGGTAgaaatatttcatataaacataTGCTACACTTTAAACTATCACAGCATAATAGgccttatttaaataagtcaTATATGTGCAGTGCAAATCTTAAACTCGCTGTCCTAAAAGTTATGTCACCTTGGCCAGCGGACTCACATTCCAGATGCCCGAAATATTCCAACAGACGACACACTTTAAACTAGCTTATTAATAGGTCATATACATTTTTCTTAACTTGTGTCTTGTTACACACTTTGCCACTTATGGTTATCTTACCTCAGAGATATTTACATtgcaaaaataatataatgaaaagAAAAGGCTTCAGGACGGTAAGGACATTGGGTTGTGGCAGACTGTGGCAATCACAGGGGACCTACTATAAATTGAGTGATGAAATAGCGACACCTACCGTCAAGTTTAAATTCTGCATTCACTCAGGAGATGTCAAACAAACTGCTCGTTTTCATGGGCTCTCCTCCTTACTGCTAAAATAGAGGAGAAACACAGTTTCAGCACATTGAGAGCAGCGTGATTTGAGCATATGGACTCTTCAAGAAACAGAATGCGGTTTGGAGGGTTCAAAATGTCTCAGAAGATCAAAGCCGGTTCTGTGGTTGAGATGCAAGGAGATGAGATGACCAGAGTAATATGGGAGCTCATAAAAGAGAAACTCATTTTCCCTTATCTGGAGCTCGATTTGCACAGCTATGACCTGGGGATGGAGAACCGCGACGCCACCGATGATAAGGTAACAGTTGAGGCAGCAGAAGCTGTGAGACGCTACAATGTGGGCATCAAGTGTGCCACCATCACTCCTGATGAGAAGCGTGTGGAGGAGTTCAAACTCAAGCAGATGTGGCGCTCTCCCAACGGAACAATCCGAAACATTCTGGGTGGCACTGTGTTCCGAGAGGCCATTATCTGCAAAAACATTCCCCGCTTGGTTCCAGGCTGGATCAAGCCTATAATTATCGGCAGACATGCACATGGGGACCAGTACAAGGCAACAGATTTTGTTGTGCCTGGCCCTGGAACAGTGGAAATGACATACAAACCCAAAAACGGAGGAGAGACACTGAAATTTGTTGTCCATGACTTTGAAGGTACCGGTGGAGTAGCTCTGGGAATGTACAACACAGACAAGTCAATCCGGGACTTTGCTCACAGCTCTTTCCAGATGGGCCTGAATAAAGGCTGGCCAATGTACCTCAGCACCAAAAACACTATCCTGAAGAAATATGATGGGCGTTTCAAAGATATTTTCCAGGAGATCTATGACAAAGAGTACAAGGCCAAGTATGAGGCCATGGGCATCTGGTATGAGCATCGGCTGATtgatgacatggtggctcaggCCATGAAGTCTGAAGGTGGGTTTATCTGGGCCTGCAAGAACTACGATGGAGACGTGCAGTCAGATTCTGTAGCTCAAGGTTATGGATCATTGGGCATGATGACCAGTGTGCTTGTATGTCCCGATGGGCGTACAGTAGAAGCTGAGGCGGCCCACGGCACTGTGACAAGACACTATCGTATGCACCAGCAGGGCAAAGAGACGTCCACCAACCCCATCGCCTCTATCTTTGCGTGGACTCGAGGGCTGCTACACCGGGCGGAGCTGGATAAGAACGCAGAGCTGCGGGTGTTTGCTGAGGCACTGGAGGTTGTTTGTGTCGAGACCATTGAAGCTGGTTTTATGACCAAAGACCTGGCCATCTGCATCAAGGGCATGTCTGGTGTCACGCGTTCAGATTACCTCAACACTTTTGAGTTCTTGGACAAACTGGCAGAGAATCTGAAGATAAAACTATCAAGCCAACCCAAACTTTAAAGCTGTAGGGTTTTTGTGggacactcacacaaacacactgacacagaACCCTGAATTCTTATCAAGCCACAAACTCTTCACATCATCTCAAGTTTAACTGGGAccaaaaacacagagaaacatcaCCACTACAACCAGTAGAGGGAGCAATGCACTTTCAACAGAAGACATGAAAGTGCCTTTTTAAATGGAAGAAACTACTGTATCACTCTTTTTAAAAACTAACTGAAAACATTCATATGGGAATAGTTATCTTTGCAGCTTATTTCATTTGTATCATGTCTCTTGTAGtgcataaatgtgtgtatttttgtgctACAGCCCATCTCTCAGGTGCTTGAACACCTGTTGCCTTACCGTCCGCATTTGTATTTGTTTCACTTTTGAAGCTGTTGCAAGAACAGTGAGATTGGgtcttaattatttaaataccTGCTTTTAATTGAAAGGCTGGTAGGTATGCCTGTAGACATTCCTCTTTATTTTCCACACTCATTACGGTCTGTCACTTTACCACAAATGAATTTCCTCTTATGTTTCTGTTTATGTCagtctgtgtgtttatgtgataAGGTCTTGTGTCAttaataaatgaaactttaagaAGAGTATCATGGTTTATTATAGTCTGATTTGTTTTCTGggtttttttattgaataatgtCAGTTATTAGGAACTCTAAAGTGCATCCCACAAAATGTGATGGTAAACCGTTAAATAGCTGTTAAAGTTTGAAATAACCTAGTATGAAATTCTCAGTGTCTAACCTTTCAGAATGAAGTTAGGTTGGGAATGTACCTTAAATGTAGTTACAGCTctctatttttatttcataaactGATGATAATATGTTTACAAAAGAACACTAATGCAATAAAATAGAGCCTTCATTTGCAGAAAACGACAATAGGTCAGAGCAAACGTGTGAATCAGTGAGAGAGACCCTACCTCATCATTCCTGAACACTTCATTGAAGACTAGCCTAAATAATTAGCCTAATTTCCTAACTAATTTTCAGTCTGGTATtatctggtcaggctggaaaaatgaccagctaaaaccaccttGACCAGTTTATCTTGACATTACTGGTTGGGCTCCCTGCCTGGCAGGTCAAACTGGTTTAGCTGGTAAtctctcagcctgaccagctaagaccaggctagcTGACCCAAACCCCCTCTAAAATCAGGCagcagctaaaaccagtcaaccagcttaggctggtttaagctgtttaaTGCAGCAGCGGTGAGGTACTGGgactttattacatttttaattatttttcacgTCTGTTTCTTACCTGATGAAATTTATTCcgccgtttccactgagtggtacaggtCGGTAAGCATTTATGTCTGTCTCTACTGTCAAGTGTTTTCATCACTCAGTGTTTTCAGTTCATGAGCTTCTGACACACTTCGATCACTAGATGGCAGCAAAATGACGTCAAAAAGGACAGCTTATTGAGGGAAGGCTATCATCTGTTTATAAAAATAGAATTTTCCTATTGAGTCTTTAAAAGAAGAGTGTTGTTAAGAACATCGTTATTAAATGTGAAAATGatgcacatttatttaataaagtaatataatgaGTGTTTGACTGGAAAACAAGAGCTTCTAAAATGAGTCCATTACCTTTGCGTGTAACTTCCACCAAGAGACCGGAGAATTATGTCTCAGCACTGAATAGCCTGACTACTACCTACACACTCCAGGCCAAGTGTGCTTGACTTTATTAGATAGATGTGAGGCTGGTCATCAGAGAGAGCGGATGAAGACCTCGTGCCTCAGACTGACACCATTGTGCCGTGATAATTGGATTCTCCCTGTGTGAATGGAGACTCTTTCACTGGCTTTTGTCAATGTAAAGATTGCTATTGTACCACAGGAAATGAAGCCTATGAATATGAAACAGACCTGTGATGATTCCGACATAAGACACTGGAACACCCGCACGACGCAACTCAAACCCCGCCCCACACAGCCGATTTCATTGGTCAATTTAAGGATCCTCACCTGATAAGACCAATTccgttttaaa

Function

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0006099 tricarboxylic acid cycle biological_process
GO:0006102 isocitrate metabolic process biological_process
GO:0006739 NADP metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005777 peroxisome cellular_component
GO:0005829 cytosol cellular_component
GO:0005739 mitochondrion cellular_component
GO:0046872 metal ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0051287 NAD binding molecular_function
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor molecular_function
GO:0004450 isocitrate dehydrogenase (NADP+) activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
ko00020 Citrate cycle (TCA cycle)
ko00720 Carbon fixation pathways in prokaryotes
ko00480 Glutathione metabolism
ko04146 Peroxisome
ko05230 Central carbon metabolism in cancer

ZFIN:

id description
ZDB-GENE-031006-1 Predicted to enable isocitrate dehydrogenase (NADP+) activity. Acts upstream of or within hemopoiesis. Predicted to be active in cytosol; mitochondrion; and peroxisome. Is expressed in several structures, including digestive system; ectoderm; mesoderm; nervous system; and pronephric duct. Human ortholog(s) of this gene implicated in autoimmune disease; hematologic cancer (multiple); hepatocellular clear cell carcinoma; and high grade glioma (multiple). Orthologous to human IDH1 (isocitrate dehydrogenase (NADP(+)) 1).

Ensembl:

ensembl_id ENSDART00000007789

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075130 lncRNA upstream 292594 27807527 ~ 27811141 (+) True XLOC_037181
TCONS_00075128 lncRNA upstream 687512 27411331 ~ 27416223 (+) False XLOC_037177
TCONS_00075129 lncRNA upstream 687512 27411615 ~ 27416223 (+) True XLOC_037177
TCONS_00075127 lncRNA upstream 754398 27348630 ~ 27349337 (+) False XLOC_037173
TCONS_00074907 lncRNA upstream 780020 27314951 ~ 27323715 (+) True XLOC_037170
TCONS_00073202 lncRNA downstream 114148 28243624 ~ 28248981 (+) True XLOC_037190
TCONS_00075131 lncRNA downstream 211635 28341111 ~ 28344611 (+) True XLOC_037191
TCONS_00073203 lncRNA downstream 269848 28399324 ~ 28403146 (+) True XLOC_037192
TCONS_00075132 lncRNA downstream 459381 28588857 ~ 28590308 (+) False XLOC_037193
TCONS_00075133 lncRNA downstream 459414 28588890 ~ 28590308 (+) True XLOC_037193
TCONS_00073195 mRNA upstream 202129 27876146 ~ 27901606 (+) True XLOC_037185
TCONS_00073186 mRNA upstream 313330 27750490 ~ 27790405 (+) False XLOC_037179
TCONS_00073185 mRNA upstream 326738 27750490 ~ 27776997 (+) False XLOC_037179
TCONS_00073187 mRNA upstream 340402 27750529 ~ 27763333 (+) False XLOC_037179
TCONS_00073188 mRNA upstream 345284 27750538 ~ 27758451 (+) True XLOC_037179
TCONS_00073199 mRNA downstream 10613 28140089 ~ 28208549 (+) False XLOC_037188
TCONS_00073200 mRNA downstream 20799 28150275 ~ 28208549 (+) True XLOC_037188
TCONS_00073201 mRNA downstream 103046 28232522 ~ 28234444 (+) True XLOC_037189
TCONS_00073204 mRNA downstream 469101 28598577 ~ 28604451 (+) False XLOC_037194
TCONS_00073205 mRNA downstream 469131 28598607 ~ 28606714 (+) False XLOC_037194
TCONS_00073196 other upstream 165317 27938302 ~ 27938418 (+) True XLOC_037186
TCONS_00073191 other upstream 259107 27834445 ~ 27844628 (+) True XLOC_037183
TCONS_00073193 other upstream 263195 27837403 ~ 27840540 (+) False XLOC_037184
TCONS_00073194 other upstream 263195 27837786 ~ 27840540 (+) True XLOC_037184
TCONS_00073192 other upstream 265722 27837062 ~ 27838013 (+) False XLOC_037184
TCONS_00073206 other downstream 502909 28632385 ~ 28632500 (+) True XLOC_037195
TCONS_00073213 other downstream 592600 28722076 ~ 28740924 (+) True XLOC_037198
TCONS_00073221 other downstream 1313017 29442493 ~ 29442609 (+) True XLOC_037204
TCONS_00073223 other downstream 1388763 29518239 ~ 29518355 (+) True XLOC_037206
TCONS_00073225 other downstream 1391266 29520742 ~ 29527021 (+) False XLOC_037207

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000009_05844758_05855489.mRNA True 2330 mRNA 0.45 8 CI01000009 5844128 ~ 5855944 (-)