RNA id: TCONS_00073200


Basic Information

Item Value
RNA id TCONS_00073200
length 7482
RNA type mRNA
GC content 0.43
exon number 7
gene id XLOC_037188
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 28140089 ~ 28208549 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gtagttttttacccagacatttaaaaagagcagtaatcacaataccctaAAATCGTGATATTGttttccaaggttatcacacTGTCAGAAtattataccggcccatgcttaATGAAGTGATTTAAACATATGGTGTAAATAGAAACGTGTCTTCCTCGTCTATTTGGCATCCAGTTTTGGCTGAGTAGAATTTTAGTGGAGAGGCAGAAATAGAAgagaatatatttttgtgtttcaCAGATTAACAAAATAGATTTACGTTGACTTGAGGGTGATTAATTGATGACAGGAGCCAACTCTTTGTTTGTTATGTGAATATCCTGTGCCTCCAAAAAACAGCTCTTCAAAAGCTATTCTTGTTTGAAACCCATAGCCCTTGAACCTTGAAACATTGCTTGTacaatgttataataaaataGCTTACTCTTTCAGTTTCACGTTGTGTTCCATGCATATCACAGACATCTGAAACAAGAGCATTATCTGTGCATGGAGTTATTGCTATGTTTTCTGACCGTTATTTGCTTTTCTCTCTTGTTTGTCTAAATCCAGGATGTCAGACCCTAGGGAAGGACGTCCTGATGCCATGTTGCATCTATCGCTTGGTGATTTACTGCCTTACAGGCTGCAGGGATTTAATTGAAGTGCTCGTCTGGATAAGACAACACCTGTTCTAGACAGCTCTGAGTTTGCCCTCACCTTACCTACTGCTGATACTGATAGCTGGCACAGCGGTCACTTCTCATTAGGTTCTTGATTAACAACGTTGGCTCATAAAGTGACAGTTCTGGAAGGGGTTCAGGCGTTTGTGGACCATCTGTTTTGCCACACTTCCATTCGGGTCCAGACAGCAGATGTTCCGTCTGCGGTGCCTTGAGGCTTCTCGATCCTGCCCTCACGCACACGAGGATTCGGTCCATTTTCTCCACCCCTCGGCTTCTTCTGTGACACCAAAACTGTCGAGGTGATGGAGGGTCTGGAGGTCGAGGATATTAGTCCAGCCCTCGAGGCCACCGAGGACTACCTGCACTGCCTCGATGACAATCACGGAGATGCCCAGGTACACCCACCCAAACTTAAAGAGGCATCCACCTTGGACAAGCTGAACTCCAGTGGGGTGTGGGGGCTTCTGACAGGAAAGCAGTCTCAGCTATCACCTGGTAATATGGCCTGGGCAGAGCAGACTCCCTTCAGTGTGCTGAGCCTTCGAAATGGGAAAAGAAACCGAGCTCGATCCACCAATGATTTGGCGGCACATGCCAAAGAGACAAACTCCACCACCAACACGTCCAGCGGGGGCTTCAAACGTGGCCACAATCGCTCCCGTTCAGATGTCAACAACCGCACCTACACCGATAATGGCATGCCAGCCATTGATAAAAATATGTTCAAGAACATGGCGCTAAACGACCACAGGGATGCTCACAAGGAGAGCAGCTCTTACCTGGTGAAGCAGGGAACTCTAGAACAGCGAGAAGGCCCGTGGGGACGGTGGACTGCCTGTCATGTGGAGCTTACACCCTGCGAACTGCGTCTCTACAGCCTCGACAGCAGCGGAAACCAGCAGCTATGTGCCGCCCTCTCGCTGTCCCACTGCCAAGGGGTAAGTGCGCCACAGCCACAGGACGGACGGGTGCTACAGGCCGTCTTCTTTAACAGCACCCGTGTGCAGTTACGAGCACCCTGCCAGTGGGAGGCACTGGAGTGGCGTAGACTCCTCTGGGAACGAGTCTTGGCCGCCCGTCCCACTCACAGCAAAGCGGAGCCAGCTTGTGCCAACTCCCCAACCCCCCATGAACCTGACCCAGATGCAGCGATGGTTCCCGCTCCTCGTCCACTGGTACGTCCCACCGCCCTACCACTGTTCACCCAGCACTGTGCTGATGTTCTCAAGTCTGGCCTTCTGCACCAACTCACCGACCTCAACAACTGGAGGGCCTTCACGTTTGTACTGAGCAGGACTGATCTGCAGGCCTTCCCGACTGAGGGAAGAGGTCCAGTGTCTGAGCCAGTGCTGCGGTACCAGCtggcatcctgtctggctgtgcAGCGGGATGATGAAGACGGAGGCAGGAGCTCCCGCTTTCAGGTCGTCTTTCCTGATGATGTGCTACGTCTGCGGGCAGAGAACGAGGCTAAGGCCCAGGACTGGGTTGAGGGTCTTCGCATTGCAGTGACAGCTCAGCGGCCGCAGTGTGAGAGTACTGAAGCCCCCAGCGGAGTCTTGATGAGGAACAAGCCAACCAGGGAGAAAAAGCACAAGGAGGCCCAGAGAGCTAAACGGCAGTCTGTCACAACTAGCTTTCTCAGCATCCTTACCTGTCTGGCCGTAGAAAAGGGCCTCACTGCTCAGAGCTTCCGATGTGCAGGATGTCAGAGGCCAGTGGGTCTATCACGGGGCAAGGCCAAAGTTTGCGCCTACAGCGGCTGGTACTACTGCACAAGTTGTCACCAGGACAACCTCTTCCTCATACCTGCCCGTCTGTTGCACAACTGGGACACTAATAGACACAAGGTGTCGAAACAAGCAAAGGAGTTTCTGGAGTTTGTTTATGAGGAGCCTCTACTGGATGTCCAGCAGTTGAACCCGTGTCTGTATGAGCATTGTGAGCCGTTGGCGGCTGTTCTCAAACTGAGACAGCAACTCCAGTCTCTCAGGGCCTATCTCTTCAGCTGCCGGGCCACAGTTGCAGAAGATCTGCGGCGCAGGATCTTCCCCAGAGAATACCTGTTGCAGCATGTGCATCTTTACTCATTGGCAGATTTGCAGCAAGTCATTGATGGAAAGCTTGCTCCCTTTCTCTCGAAGGTAATCAAGTTTGCCAGCTCTCATGTGTACAGTTGTAGTCTGTGCCGAGAGAAGGGCTTTATCTGTGAGCTCTGCCACACTGGCCAGGTCATCTACCCCTTCCAGGAGAATGCCACCAAAAGGTGCGAGGGCTGTGGAGCCGTCTTCCACGCCGAGTGCCGAATGCGAGCTCAGCCATGCCCACGGTGCGTTCGGAGAGAGCTGCACAAGAAGCCGGCATCATTCTGGAAGAGACACGGTCCTCACGACAGCCCTGACGACGAGGTGCTGGACTGCTTCGAGCTGGACACCTGAGACGCATTACCAAGAGCAAAACTGTGCTAATGAAGTCTAAGAGCTGCTGTACCACAAGACTCTGTGCTCCCTCAGTGAAAGTGCTCTGTCAAAACCGAGAAACAGAGGAGCTTTTTTACCTTCTCCCTCACCTGAGAGAGATGGGCACAGAGACAATAATTCAGCTTCCGAAGAGCAGTGGCTTCATAATGATACCAATTTACCCTTCCCTTTCATCTACCAAATGACAGCCAGGGCCAACCGACAAATACAGGCAAAGTACGCTCGCACACTTGCACATAAACACACTCTCACTGACAGATGTAAAATAATGCACTTTCTGGCAGACTCACAATCCAAGAGCGATGATTCAAACCAATCTCTGGACACAAATAGAGCTTCTAATCCATTAATGGTTGGGTGAAAATGAGCGCTGCAAGATGGCCGTCATGTTCGGCTTCCCTTCACCTACAATACCGAAGACCCTTGAATCTCGATGgctgaacataaaaataaatgtgcgtagaactttttattttttacttttccaAGGCGATTGCATTGTTAcatttgttctgttttatttattacaagtTCATTGCACTTTAAGTATTTTGCCATTTTTGTCTTAAATCTTCGAAGCTTTCAGCTTTGCACACTCCATGATGGTTGAAGTTGGGGGTGTAATGTCAACTGGTGTCTCTTTCCGTCCAGCTGGAGCTTAGAAAGCTTGACTGTTTATCAACACTCAGTGGCGCTGCCTATAAGCAGCAGAAGCACGTTGTTCTTGCTAACCGCTCGGTCTGTGATTACAAACTACCCTCAGCCACCAAGCCCCGAAATTACAGTCTAGAGTTTTAGGGCTTTGTTTAGCATTCATACGTCTTTTTAACAAGAAACATAAAGCAAAGCCACCATGGACGGGCTCATAATTCATGTCCAACTGACCTCGGATTCAGATCCATGCTGCACCGTTGCATCCATACAATGGTTTTCTGAATATTTCAACTTAGAATTGAGATAAAAGTCTCATTTTGCTCAGTCAGATCTCAATCAGATCTGTTCTTTCCAATTGGACAATGAAGTGCTGCAGCCATAATTGCAAAGACGTCAAATTTATCAATgactttaaaggaacactcctcttttttttgtaaatagactcattttacaagtcacctagagttaaacagttgtgttttacaattgtttttacacattcagctaatctctgggtctggctgaagcacttttagcttagcataaattgtTGAActgtattagaccattagcatataaCTCAAAGagagtttagataattttccaatttaaagcttgactcttcattttctgttggtcttagtAAGTACATGAAGTAACTACAAAAAAGTTACTATCTTCTAGgccgatatggctaggaactttgctgccataccatgtCTGCAgcaggctttaaataagaaatgaTCAAAACTTTTttggagtgagatgctaatggtttaatccaatttaatgatttatgcgaAGCTAAGCTGAATGGATTTTGAACAAAATGGTAAAACTTTACTGTTTAACTCCAGGTGGCTTACAAAATAAGCTATGACCCTGCTGTAGTTACTTTGTGTACATGCTTAGACcaacaaaaaatgaaaagttgctattttcttggCCGATATGGctgggaactatactctcattccaccataataatcaaggaacgtTGCTGCCATACCATAGCTGCAGCAGGCTATGAAAATGAACAAACCTTTTttggagtgagatgctaatggtctaatccaattcaatgatttatgctaagctaagctgaaaggatttaaaaaaagataatactcaactgtttaaatctagccgacttgtaaaatgagctttAACTCTTTTGTAGTTATTTTGTGTACGTACGAAGTATACGTACGAAGTACGAACTATACTCTCACTCTAGCATAATAATCAAGCAACGTTGCTGCCGTACCATGGCAGCAGCAGGCTTTAAAAAGGAAATCTATCAAAACTTTTTTGGAGCGAGATGCTagtggtctaatccaattcaatgatttatgctaagctaaactaagctaaatatattaaaaactagTAAAACTTAACAGTTTAACTCCAACAAAATGAACATATTTCCAAAAAAGTGACATGTtccataaagatttttataaagaCTTGGCATTTCAATTCACGAGTGAGAAATAATACATGATTAACTATGCTTATGCCAAAAGTATGAATTTGAAAGGatttatgtgtattttaaaaatgtaagtttctAGTAAGTAGCTAGTTTATACTATAGAACACAACTTCAATGTTCACCGCAGACCTTATTTTACtaatcatgaaaacaaacaaaatctcaATAGCTAAACAATGGCAGATTAATCAAATTAGTCTACACTTTTTATAAACAAAAGAGGCTGACTGTTCCCTAAAAATAgctattttatatcatttttactTCGTTTTTCCTTTTGTTTAACTAACAGTAGGAGAAAATGACAGTGGTTCAAATTAGAGTTGGTTAACTTTCTGGCCACTTCACCAGCAAACAGAGGCTTCAGATGTAAATCCCTTTCAGCTTTACCACATTGGAACAATACCTGCACATATTAAAAAAAAGCCATCTACAACCATCTGGTTATATTGGACGTGCAACAGCTGGAGCTTTGACTTCAAGAAAAAGAGTTACTTTATGACCTGCCGACAGTTGTCGCGTATAGCCCTCTGAAGATGGGTCTACTGTAGGTCAACTTGCATATCATTTGCTACTatgttacatttatattttcttaTGGGAGAATGTGTTAATTCTGTTGAGCTTATGTTTGTTGTTTACTTCTGAAAGGGATCAGATTTCGTTTGAGTTTGGCTAGTGTGTGaaaggatgatggatggatgattgttTCAAGtatttggtttttatttattgactgtGTATTTTTGCCTGCCTTAAATTGAAAGCCAATGCATCGGCCTGTTGATGTTCTTCGATTAgcaagctatagaaataaaacatttcagtatttattaatctaATCAGGATATCAGGCTGtagaatatattataatataatcacTTAATCAATTTTGTTTATTGCAGGCGAACTTACCTTACTAGAAAGGAATATATCGATCTCATTTTCTCATTAGAGATCTCATTATGTCTCCATTTTCAACTTGAATTGAGCTTAAATGCACCATGTTTACTGATACTGTTAGATAGCAGTCGGATTGCTTTGAACATTTGATATATCATGCTACATTGCGTTATTTAAAATCAGGGATTCTTAACACACTGAATAACGGTTATGGAAGGGAGAATTCAAAAGAAAACTCAGTGGATGTACTTGGCGAATAGTTTTGTTCTTTCAATACACCAAATTGGtcctttattttcatatttgttcaAGGTGTAATGGAAGTTTCTCTTTCGTTTGTCATCATGTTGTATATTTACATATCAGTTCTGTTCAGaagtatttattgtattatttatattcttCCCTGCAATTTCTGTCTCAGTTTCCGGAATTTTCCCTGTGCTTTCTTGTATTCTGTAAACTCTCCATTACAGACGACCTCTTATGCAACTACAAATATTTGTGTTCCAGTACTGGTGTGGGGTTTTctcctctttttcttttctttttaccaCTGTTGCCAATAAAGTCAAATACTTAACACATCcacctctttttttatttttatgggtAATGTTTTCATCTGAATTGACTTTTAGGATTTCGCTAAGTAATTCCAATTCCGCACGGATTAGTTTCCTGGTCACAATCCAAGGTGGCAGCAGTGGAAAGAAATGCATCATGGCCGTGGCTGTGGTTGTGGTGTTCCCTTTTAGGTCCTGTGCAGCGGAGTGGGTCCAAGCACTGACTCACGGGCTAATCCCAAATTAAAAGCCACATGCTTGTATCTGGTTCTGTCTGGAGTTGCACCAAAAGCCACTGGACCTGTTTGAGACCACAGCATGAggcttgtaatttttttatttattttttttgcacagcgGTTCCGATGTATAAACATGTGAAATTCAGGCTATGATGATATGATTCTATTGAGAATAGTTACCATGGAGGTATTTTCTTTATCTTCAAggcattttaaatatttgttcaaTCTATCCGAGGCTCAACAATTAGGATGGTCTGCTGGCTCAGAGTCTGCTTGAGGGAGACTCAGTTCAGAAGACTGAAAAGTACTCTCAAAATCGTTTTAcacatgtatttttaatgcattgcaaattttaggcttaaattttacaaaataattatgtgtcttTAAGAATGTATTAAAAACTACACTATTGTCTGGTATTATAGGCCAGTATTAtgctattatatttgttttttttgtgag

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-382 Orthologous to human PLEKHM3 (pleckstrin homology domain containing M3).

Ensembl:

ensembl_id ENSDART00000192129

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00074908 lncRNA upstream 19540 28128698 ~ 28130735 (+) False XLOC_037187
TCONS_00074909 lncRNA upstream 19540 28129107 ~ 28130735 (+) True XLOC_037187
TCONS_00075130 lncRNA upstream 339134 27807527 ~ 27811141 (+) True XLOC_037181
TCONS_00075128 lncRNA upstream 734052 27411331 ~ 27416223 (+) False XLOC_037177
TCONS_00073202 lncRNA downstream 35075 28243624 ~ 28248981 (+) True XLOC_037190
TCONS_00075131 lncRNA downstream 132562 28341111 ~ 28344611 (+) True XLOC_037191
TCONS_00073203 lncRNA downstream 190775 28399324 ~ 28403146 (+) True XLOC_037192
TCONS_00075132 lncRNA downstream 380308 28588857 ~ 28590308 (+) False XLOC_037193
TCONS_00075133 lncRNA downstream 380341 28588890 ~ 28590308 (+) True XLOC_037193
TCONS_00073197 mRNA upstream 20799 28103735 ~ 28129476 (+) False XLOC_037187
TCONS_00073198 mRNA upstream 22251 28116079 ~ 28128024 (+) False XLOC_037187
TCONS_00073195 mRNA upstream 248669 27876146 ~ 27901606 (+) True XLOC_037185
TCONS_00073186 mRNA upstream 359870 27750490 ~ 27790405 (+) False XLOC_037179
TCONS_00073201 mRNA downstream 23973 28232522 ~ 28234444 (+) True XLOC_037189
TCONS_00073204 mRNA downstream 390028 28598577 ~ 28604451 (+) False XLOC_037194
TCONS_00073205 mRNA downstream 390058 28598607 ~ 28606714 (+) False XLOC_037194
TCONS_00073207 mRNA downstream 480025 28688574 ~ 28691972 (+) False XLOC_037196
TCONS_00073208 mRNA downstream 481205 28689754 ~ 28691970 (+) True XLOC_037196
TCONS_00073196 other upstream 211857 27938302 ~ 27938418 (+) True XLOC_037186
TCONS_00073191 other upstream 305647 27834445 ~ 27844628 (+) True XLOC_037183
TCONS_00073206 other downstream 423836 28632385 ~ 28632500 (+) True XLOC_037195
TCONS_00073213 other downstream 513527 28722076 ~ 28740924 (+) True XLOC_037198
TCONS_00073221 other downstream 1233944 29442493 ~ 29442609 (+) True XLOC_037204
TCONS_00073223 other downstream 1309690 29518239 ~ 29518355 (+) True XLOC_037206
TCONS_00073225 other downstream 1312193 29520742 ~ 29527021 (+) False XLOC_037207

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000009_05798886_05836104.mRNA True 6231 mRNA 0.48 13 CI01000009 5797882 ~ 5838430 (-)