Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00073201 |
| length | 1923 |
| RNA type | mRNA |
| GC content | 0.52 |
| exon number | 1 |
| gene id | XLOC_037189 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007120.7 |
| NCBI id | CM002893.2 |
| chromosome length | 56459846 |
| location | 28232522 ~ 28234444 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0060070 | canonical Wnt signaling pathway | biological_process |
| GO:0043010 | camera-type eye development | biological_process |
| GO:0048794 | swim bladder development | biological_process |
| GO:0035567 | non-canonical Wnt signaling pathway | biological_process |
| GO:0007275 | multicellular organism development | biological_process |
| GO:0090090 | negative regulation of canonical Wnt signaling pathway | biological_process |
| GO:0001889 | liver development | biological_process |
| GO:0007166 | cell surface receptor signaling pathway | biological_process |
| GO:0016055 | Wnt signaling pathway | biological_process |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0004888 | transmembrane signaling receptor activity | molecular_function |
| GO:0042813 | Wnt-activated receptor activity | molecular_function |
| GO:0017147 | Wnt-protein binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-990415-218 | Enables Wnt-activated receptor activity. Acts upstream of or within animal organ development; negative regulation of canonical Wnt signaling pathway; and non-canonical Wnt signaling pathway. Predicted to be located in membrane. Predicted to be active in plasma membrane. Predicted to be integral component of membrane. Is expressed in several structures, including endoderm; eye; gut; hematopoietic stem cell; and neural plate. Used to study coloboma. Orthologous to human FZD5 (frizzled class receptor 5). |
| ensembl_id | ENSDART00000031761 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00074908 | lncRNA | upstream | 101787 | 28128698 ~ 28130735 (+) | False | XLOC_037187 |
| TCONS_00074909 | lncRNA | upstream | 101787 | 28129107 ~ 28130735 (+) | True | XLOC_037187 |
| TCONS_00075130 | lncRNA | upstream | 421381 | 27807527 ~ 27811141 (+) | True | XLOC_037181 |
| TCONS_00075128 | lncRNA | upstream | 816299 | 27411331 ~ 27416223 (+) | False | XLOC_037177 |
| TCONS_00073202 | lncRNA | downstream | 9180 | 28243624 ~ 28248981 (+) | True | XLOC_037190 |
| TCONS_00075131 | lncRNA | downstream | 106667 | 28341111 ~ 28344611 (+) | True | XLOC_037191 |
| TCONS_00073203 | lncRNA | downstream | 164880 | 28399324 ~ 28403146 (+) | True | XLOC_037192 |
| TCONS_00075132 | lncRNA | downstream | 354413 | 28588857 ~ 28590308 (+) | False | XLOC_037193 |
| TCONS_00075133 | lncRNA | downstream | 354446 | 28588890 ~ 28590308 (+) | True | XLOC_037193 |
| TCONS_00073199 | mRNA | upstream | 23973 | 28140089 ~ 28208549 (+) | False | XLOC_037188 |
| TCONS_00073200 | mRNA | upstream | 23973 | 28150275 ~ 28208549 (+) | True | XLOC_037188 |
| TCONS_00073197 | mRNA | upstream | 103046 | 28103735 ~ 28129476 (+) | False | XLOC_037187 |
| TCONS_00073198 | mRNA | upstream | 104498 | 28116079 ~ 28128024 (+) | False | XLOC_037187 |
| TCONS_00073195 | mRNA | upstream | 330916 | 27876146 ~ 27901606 (+) | True | XLOC_037185 |
| TCONS_00073204 | mRNA | downstream | 364133 | 28598577 ~ 28604451 (+) | False | XLOC_037194 |
| TCONS_00073205 | mRNA | downstream | 364163 | 28598607 ~ 28606714 (+) | False | XLOC_037194 |
| TCONS_00073207 | mRNA | downstream | 454130 | 28688574 ~ 28691972 (+) | False | XLOC_037196 |
| TCONS_00073208 | mRNA | downstream | 455310 | 28689754 ~ 28691970 (+) | True | XLOC_037196 |
| TCONS_00073210 | mRNA | downstream | 459148 | 28693592 ~ 28696999 (+) | False | XLOC_037197 |
| TCONS_00073196 | other | upstream | 294104 | 27938302 ~ 27938418 (+) | True | XLOC_037186 |
| TCONS_00073191 | other | upstream | 387894 | 27834445 ~ 27844628 (+) | True | XLOC_037183 |
| TCONS_00073206 | other | downstream | 397941 | 28632385 ~ 28632500 (+) | True | XLOC_037195 |
| TCONS_00073213 | other | downstream | 487632 | 28722076 ~ 28740924 (+) | True | XLOC_037198 |
| TCONS_00073221 | other | downstream | 1208049 | 29442493 ~ 29442609 (+) | True | XLOC_037204 |
| TCONS_00073223 | other | downstream | 1283795 | 29518239 ~ 29518355 (+) | True | XLOC_037206 |
| TCONS_00073225 | other | downstream | 1286298 | 29520742 ~ 29527021 (+) | False | XLOC_037207 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | CI01000009_05784097_05785842.mRNA | True | 1778 | mRNA | 0.54 | 1 | CI01000009 | 5784065 ~ 5785842 (-) |
