Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00073198 |
| length | 1477 |
| RNA type | mRNA |
| GC content | 0.44 |
| exon number | 7 |
| gene id | XLOC_037187 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007120.7 |
| NCBI id | CM002893.2 |
| chromosome length | 56459846 |
| location | 28103735 ~ 28130735 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0030097 | hemopoiesis | biological_process |
| GO:0006099 | tricarboxylic acid cycle | biological_process |
| GO:0006102 | isocitrate metabolic process | biological_process |
| GO:0006739 | NADP metabolic process | biological_process |
| GO:0055114 | oxidation-reduction process | biological_process |
| GO:0005777 | peroxisome | cellular_component |
| GO:0005829 | cytosol | cellular_component |
| GO:0005739 | mitochondrion | cellular_component |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0016491 | oxidoreductase activity | molecular_function |
| GO:0051287 | NAD binding | molecular_function |
| GO:0016616 | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | molecular_function |
| GO:0004450 | isocitrate dehydrogenase (NADP+) activity | molecular_function |
| GO:0000287 | magnesium ion binding | molecular_function |
| id | description |
|---|---|
| ko00020 | Citrate cycle (TCA cycle) |
| ko00720 | Carbon fixation pathways in prokaryotes |
| ko00480 | Glutathione metabolism |
| ko04146 | Peroxisome |
| ko05230 | Central carbon metabolism in cancer |
| id | description |
|---|---|
| ZDB-GENE-031006-1 | Predicted to enable isocitrate dehydrogenase (NADP+) activity. Acts upstream of or within hemopoiesis. Predicted to be active in cytosol; mitochondrion; and peroxisome. Is expressed in several structures, including digestive system; ectoderm; mesoderm; nervous system; and pronephric duct. Human ortholog(s) of this gene implicated in autoimmune disease; hematologic cancer (multiple); hepatocellular clear cell carcinoma; and high grade glioma (multiple). Orthologous to human IDH1 (isocitrate dehydrogenase (NADP(+)) 1). |
| ensembl_id | ENSDART00000101338 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00075130 | lncRNA | upstream | 304938 | 27807527 ~ 27811141 (+) | True | XLOC_037181 |
| TCONS_00075128 | lncRNA | upstream | 699856 | 27411331 ~ 27416223 (+) | False | XLOC_037177 |
| TCONS_00075129 | lncRNA | upstream | 699856 | 27411615 ~ 27416223 (+) | True | XLOC_037177 |
| TCONS_00075127 | lncRNA | upstream | 766742 | 27348630 ~ 27349337 (+) | False | XLOC_037173 |
| TCONS_00074907 | lncRNA | upstream | 792364 | 27314951 ~ 27323715 (+) | True | XLOC_037170 |
| TCONS_00074908 | lncRNA | downstream | 674 | 28128698 ~ 28130735 (+) | False | XLOC_037187 |
| TCONS_00074909 | lncRNA | downstream | 1083 | 28129107 ~ 28130735 (+) | True | XLOC_037187 |
| TCONS_00073202 | lncRNA | downstream | 115600 | 28243624 ~ 28248981 (+) | True | XLOC_037190 |
| TCONS_00075131 | lncRNA | downstream | 213087 | 28341111 ~ 28344611 (+) | True | XLOC_037191 |
| TCONS_00073203 | lncRNA | downstream | 271300 | 28399324 ~ 28403146 (+) | True | XLOC_037192 |
| TCONS_00073195 | mRNA | upstream | 214473 | 27876146 ~ 27901606 (+) | True | XLOC_037185 |
| TCONS_00073186 | mRNA | upstream | 325674 | 27750490 ~ 27790405 (+) | False | XLOC_037179 |
| TCONS_00073185 | mRNA | upstream | 339082 | 27750490 ~ 27776997 (+) | False | XLOC_037179 |
| TCONS_00073199 | mRNA | downstream | 12065 | 28140089 ~ 28208549 (+) | False | XLOC_037188 |
| TCONS_00073200 | mRNA | downstream | 22251 | 28150275 ~ 28208549 (+) | True | XLOC_037188 |
| TCONS_00073201 | mRNA | downstream | 104498 | 28232522 ~ 28234444 (+) | True | XLOC_037189 |
| TCONS_00073204 | mRNA | downstream | 470553 | 28598577 ~ 28604451 (+) | False | XLOC_037194 |
| TCONS_00073205 | mRNA | downstream | 470583 | 28598607 ~ 28606714 (+) | False | XLOC_037194 |
| TCONS_00073196 | other | upstream | 177661 | 27938302 ~ 27938418 (+) | True | XLOC_037186 |
| TCONS_00073191 | other | upstream | 271451 | 27834445 ~ 27844628 (+) | True | XLOC_037183 |
| TCONS_00073206 | other | downstream | 504361 | 28632385 ~ 28632500 (+) | True | XLOC_037195 |
| TCONS_00073213 | other | downstream | 594052 | 28722076 ~ 28740924 (+) | True | XLOC_037198 |
| TCONS_00073221 | other | downstream | 1314469 | 29442493 ~ 29442609 (+) | True | XLOC_037204 |
| TCONS_00073223 | other | downstream | 1390215 | 29518239 ~ 29518355 (+) | True | XLOC_037206 |
| TCONS_00073225 | other | downstream | 1392718 | 29520742 ~ 29527021 (+) | False | XLOC_037207 |
