RNA id: TCONS_00073183


Basic Information

Item Value
RNA id TCONS_00073183
length 2255
RNA type nonsense_mediated_decay
GC content 0.47
exon number 14
gene id XLOC_037178
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 27720267 ~ 27734078 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AATTGTCTTTGGAACAATCCTACGGTACAAGTACCGACACTCGGCATGTAAAGTACACATGTTTATATGTTTGAATGAACGTATTTTGCTTAGACTTGTAAGGTTTAATTGTAAAAGCTTTTGTCATAGACGAAAGGAAGCCGCTTCCGCTGTGCTGCTTCCTTGTTGTTCACAGTGAAGACTACACGTGTGTCCAGAGAGTGATGCCAGTAAACAGAAAAAGAGAACAAGGAAAAGATGCTGCCGTACAAGGGACAAATGACAGCAGTGTGGTCAGTAAGGTGTCAGCAGCGGCACAGGGCTACTTCCATGATGATTTCCTCAAGCATTTTGTGTGCAAGATGTCAAGAAGAGCTCCACTCATTAATAGAGGTTATTATGTGCGCTGGAAGGCAGTCGATCACTGTGTGAAGCAGTTTCTCCATGCAACAAAATCCTGCTCCAGGAGACAGATTCTGTCACTGGGAGCGGGGTTTGACTCGCTGTTTTTCCGGCTGCGTGCAGAAGGAGCCCTTGGAGGTGTCACTGTTTTTGAAGTTGACTTTCCAGAAGTTGCCCGTCGCAAAGCTGCCTTGATCAATAGCAATGCTTGCCTGAAGGACTTGTTGCCAGATTGGGAGACTGTCCTAAATAAGCAGACAAGAAGGAGCAGGAGGTGGAGGCAAGTCTGAGCGCAGCTGGACTGCAGTGGGACAATCCTACACTCATCCTGTCAGAGGTGGTGCTGACTTACATGGAGACGCAATGGTCGGATGCTGTGATTGGCTGGGCTGCCAGGCTCCTCCCACAGTCTATGTTCGTGATGTATGAACAGATCCACCCAGATGACCCATTTGGCAGAGTCATGCAGAGCCACTTCCTTAAGCTCAACTCTAAAATTCATTCTCTACAACAATATCCAGACAATGTGGCTCAAACCCAGAGATTCATACAGGAAGGCTGGGAAAAATGTCACTGTCTGGACATGAACCAGTTTTATTTTGATCTTCTTCCTGAAGATGAGAGGCAGAGAATCGAAAATCTGGAGCCGTTTGATGAGTTTGAGGAATGGCATCAGAAATGTTCTCATTACTTCATCCTTACTGCCTCCAAAGGCTCTGTGACCAGGCAAGCTCTTCTCACGCTACCAAATACATCCTCCATTCCCCAAATGACTCCTCAATGGAACACACATCCTCCTCTGGTCGTTCAGCCCATGTGTGGATCACCGTCTGTGGAGGCTCTTGGTATGGCATCTGCCCTTCTGACCCCTGAAATCATCCTTCTCACTGGAGGCTTTGGAAGAAATGGAAGAGACACTGCAGCAAGGGTCCTGATCAAAGAGAAGTGTGGCTGGAAAAGTGCCTGTGTAGAAGTACATGGAGATAAAGTGGTGAGTCTTTATCAGACGTTGACTTCTGTCCCTGGTGGTGGAGTCGTTCTTTTCGGAGGCCGATCTTCTCCACTTAGTCCATCAGGCAGTGTCGTTTTGGTGACCGCTGACCTTGCTGATGAAGTACAACTTTCATTCACGAACATAGTTTGTACTGGCACTGGTCCAAAGCCACGATGGCGACACACATCTACTTTAATATGCTACAACGACAAGACCTTTCTGTTTGTGTTTGGAGGACGTTCTGAAAAGGATCCGATTCTAGGAGATGCACATTTCCTGTGTTTGGAAGACAAGCACTGGACTGAGGCATGtattaaaacacattgaaaaCATACAATTTGATGATTACAGTTGTTGGTGCTGGTCCGGAAGCCCGCCACTCCCATTCAGCTTGTCCCTATGGAGGGGGGCTTGTGATATTTGGAGGTTTGGGGGAAGGAGGCAAACCTCTGGGGGATGCCCTTTATCTAAGACCCACATCATCAGGTTTCTGCTGGGAGATGAAAGATTTACATCCACCTCCAGTGCCCAGATACTCTCACTCAGCTCATGTAATTAATGAGAAGCTGGTTGTGGTTGGTGGAGTCTGGCTTCAGGCTGATGGAGTACCAGGAGTTTCTATAGTAAATCTCAACACTGGAAGCTGTGTGGAGATCCAGCTGGATACTTTGTCTGTGCCTTGGCCTCTGATGCTGCATTCGTTCTGCTCTGAGTTGCTGGATTGTGAAGGATCCGAGCTGGTGCTGATTGGTGGAGGTGGAAACTGTTTCTCATTTGGAACTCACCTCAACCTTCATCCTGTTACTGTGGATCTTAAACCAATACTTTGCTTTTGATTTTAGTCATAGCACTCAAGTACAAACCACAAACAAGCAACAAA

Function

GO:

id name namespace
GO:0030488 tRNA methylation biological_process
GO:0031591 wybutosine biosynthetic process biological_process
GO:0032259 methylation biological_process
GO:0008168 methyltransferase activity molecular_function
GO:0008175 tRNA methyltransferase activity molecular_function

KEGG:

id description
ko03016 Transfer RNA biogenesis

ZFIN:

id description
ZDB-GENE-110714-2 Predicted to enable tRNA methyltransferase activity. Predicted to be involved in tRNA methylation and wybutosine biosynthetic process. Predicted to act upstream of or within methylation and tRNA processing. Orthologous to human LCMT2 (leucine carboxyl methyltransferase 2).

Ensembl:

ensembl_id ENSDART00000144481

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075128 lncRNA upstream 304044 27411331 ~ 27416223 (+) False XLOC_037177
TCONS_00075129 lncRNA upstream 304044 27411615 ~ 27416223 (+) True XLOC_037177
TCONS_00075127 lncRNA upstream 370930 27348630 ~ 27349337 (+) False XLOC_037173
TCONS_00074907 lncRNA upstream 396552 27314951 ~ 27323715 (+) True XLOC_037170
TCONS_00074906 lncRNA upstream 418702 27300664 ~ 27301565 (+) True XLOC_037169
TCONS_00075130 lncRNA downstream 73940 27807527 ~ 27811141 (+) True XLOC_037181
TCONS_00074908 lncRNA downstream 395111 28128698 ~ 28130735 (+) False XLOC_037187
TCONS_00074909 lncRNA downstream 395520 28129107 ~ 28130735 (+) True XLOC_037187
TCONS_00073202 lncRNA downstream 510037 28243624 ~ 28248981 (+) True XLOC_037190
TCONS_00075131 lncRNA downstream 607524 28341111 ~ 28344611 (+) True XLOC_037191
TCONS_00073182 mRNA upstream 303655 27411502 ~ 27416612 (+) False XLOC_037177
TCONS_00073181 mRNA upstream 340528 27379193 ~ 27379739 (+) True XLOC_037176
TCONS_00073180 mRNA upstream 340546 27379014 ~ 27379721 (+) False XLOC_037176
TCONS_00073179 mRNA upstream 348388 27371240 ~ 27371879 (+) True XLOC_037175
TCONS_00073178 mRNA upstream 364934 27354653 ~ 27355333 (+) True XLOC_037174
TCONS_00073185 mRNA downstream 16903 27750490 ~ 27776997 (+) False XLOC_037179
TCONS_00073186 mRNA downstream 16903 27750490 ~ 27790405 (+) False XLOC_037179
TCONS_00073187 mRNA downstream 16942 27750529 ~ 27763333 (+) False XLOC_037179
TCONS_00073188 mRNA downstream 16951 27750538 ~ 27758451 (+) True XLOC_037179
TCONS_00073195 mRNA downstream 142559 27876146 ~ 27901606 (+) True XLOC_037185
TCONS_00073172 other upstream 437831 27282322 ~ 27282436 (+) True XLOC_037168
TCONS_00073169 other upstream 1022962 26694869 ~ 26697305 (+) True XLOC_037166
TCONS_00073166 other upstream 1215815 26199659 ~ 26504452 (+) False XLOC_037163
TCONS_00073165 other upstream 1308889 26199624 ~ 26411378 (+) False XLOC_037163
TCONS_00073164 other upstream 1426678 26199624 ~ 26293589 (+) False XLOC_037163
TCONS_00073189 other downstream 48917 27782504 ~ 27787376 (+) True XLOC_037180
TCONS_00073190 other downstream 84338 27817925 ~ 27822574 (+) True XLOC_037182
TCONS_00073191 other downstream 100858 27834445 ~ 27844628 (+) True XLOC_037183
TCONS_00073192 other downstream 103475 27837062 ~ 27838013 (+) False XLOC_037184
TCONS_00073193 other downstream 103816 27837403 ~ 27840540 (+) False XLOC_037184

Expression Profile

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