RNA id: TCONS_00073173


Basic Information

Item Value
RNA id TCONS_00073173
length 1882
RNA type mRNA
GC content 0.39
exon number 6
gene id XLOC_037171
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 27329640 ~ 27337185 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACTCGTTTGTTTCCTCCGGATTGATTCTGATGTAGTACGCGCATGTACACAAGTACGATacatttaaaatcaataaatgagACATTTTTACGGTCTTTTTACAAATAGAAATTGGGTTTATTTCAGGTTTAATagttataaaatttaattttcagCCCAGCGAATTTAACCTGAAGATGTTATCGGATTTGCAGTAAGATGTCTCTAtgtgaccattttttttcttgcagCATGTGTACAACAAAAACGTtatgaaatgtttttataataatttgaagTATAACATATATGTGAATCCCGTGTAGACGTAAACCATGGTAACACTGGATAAAAATAATCAATACTTGATTGTATTTCttagttaaattattaaaaattcaagaaaaaaaataataaaacaaggcAACTTTAACTCAGAATTCCCATGTAACAGATTACAATGAATCAGACATCAGTGCAGTTAAAAAACTGATTTCCAAAGTCAACCAATCTCATCTTTAATGAACTGATCCAACAAAATGCTGAGGATAAAGGCACTGGCACCACTGCAGACACGAGTATCGTGTTGGCTTTTGGTCCTTCAGAGAGGTCATCGTCTGGCCTCCATCAAACATGTGTGTCAGCTCTCAGAGAGGAAGCGTCAGAGTCTGCTGTACCCTTTTAGTGATCTGGAGGGGCACCTGTTCTCACAGGTCAATCAGGCACAATTCAAGATCTTCCATCCCAGTTTGGAGGAACTCCGCCAGGCAGAGACACTTTTCACTCCCTCCTCTAAACATGTCATCAACTACTCGACTTCTGCTGTCAGGATGGACCATGTCCCTATTCTTAAACAGCCTGAGGTGTGTTTTATGGGCAGGAGTAATGTGGGGAAGTCTTCTCTCATCCGTGCCTTATTCTCTCTTGCACCAGAGGTGGAAGTGCGGGTCTCTAAAACTCCAGGTCACACCAAAAAGCTCAATTTCTTTACTGTGGGAAAAGCGTTTACTCTAGTAGACATGCCTGGCTATGGACACATGGCACCACAGGACTTTGTAGAGATGGTTGAACCGTATCTTCAGGAGCGCCACAATTTGGCGAGGACGTTCTTGCTGGTGGATGCAAGTGCAGGATTGCAGAGTACTGATTTAGTTGCTGTGGAGATGTTTGAAGAATTTAATTTGCCTTATGTGctgGTGGTAACCAAGATAGACAGAACCCGACAGGGTGCTTTGTTGGCTCTTGCTCTGGAGCTTCAGGACTTCATCAAAAAGCAAACCACAGCTTGTTTCCCACAACCATTTTTAGTGAGTTCAGTCCAATTCTCCGGGATTCACCTGCTCAGATGTTTCATAGCACACGTAACTGGGAAACAACTGCTTTCTGCTAAACAATCATGAATGTACAGGACTGCCATGCACTGACACCACGTGGACAAATCTCATTtccaaaacacattttgaaaaagACCAATTTTAAGCATAGAAATGTTGATGTCGAGTCTGTGCATTAATGACTAATGCAGAGGAATCATGTTGTTACTGGTTTCAGGATTCATTCAACCCTGTATGAACTCCATGAATGATCCAGGATTGAGTGTGAGTGAGCTTTCAGAGGAAATaagaaaaattttaatttttgtaaatggTATCATGGCATAGTACATACACACTGATATTAGTCGCagtgattaaaaaaatgaagaaatttaCCATGTGGAATTAACTCCATGCTTCATATACAGATTGTATAAATTCAACCTAAAAGTTACTGTTGAAACCTGTATTTGCTGTAGAATAATTTTCATAATCgttcaaaatcatttatttttgtgcatttcaTCGATCTATTTCATTTAGTCTATGACATTTCAGTCAAATCAATTAAATACTATGACAGTTA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000111039

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00074907 lncRNA upstream 5925 27314951 ~ 27323715 (+) True XLOC_037170
TCONS_00074906 lncRNA upstream 28075 27300664 ~ 27301565 (+) True XLOC_037169
TCONS_00075126 lncRNA upstream 104506 27182702 ~ 27225134 (+) True XLOC_037167
TCONS_00075125 lncRNA upstream 146451 26896788 ~ 27183189 (+) False XLOC_037167
TCONS_00075124 lncRNA upstream 254226 26896788 ~ 27075414 (+) False XLOC_037167
TCONS_00075127 lncRNA downstream 11445 27348630 ~ 27349337 (+) False XLOC_037173
TCONS_00075128 lncRNA downstream 74146 27411331 ~ 27416223 (+) False XLOC_037177
TCONS_00075129 lncRNA downstream 74430 27411615 ~ 27416223 (+) True XLOC_037177
TCONS_00075130 lncRNA downstream 470342 27807527 ~ 27811141 (+) True XLOC_037181
TCONS_00074908 lncRNA downstream 791513 28128698 ~ 28130735 (+) False XLOC_037187
TCONS_00073167 mRNA upstream 1036039 26199674 ~ 26293601 (+) True XLOC_037163
TCONS_00073161 mRNA upstream 1202335 26103814 ~ 26127305 (+) False XLOC_037161
TCONS_00073159 mRNA upstream 1233014 26086135 ~ 26096626 (+) False XLOC_037160
TCONS_00073157 mRNA upstream 1415656 25853052 ~ 25913984 (+) True XLOC_037157
TCONS_00073156 mRNA upstream 1417673 25840720 ~ 25911967 (+) False XLOC_037157
TCONS_00073174 mRNA downstream 2320 27339505 ~ 27344683 (+) True XLOC_037172
TCONS_00073175 mRNA downstream 11624 27348809 ~ 27349361 (+) True XLOC_037173
TCONS_00073176 mRNA downstream 15113 27352298 ~ 27355281 (+) False XLOC_037174
TCONS_00073177 mRNA downstream 17229 27354414 ~ 27355281 (+) False XLOC_037174
TCONS_00073178 mRNA downstream 17468 27354653 ~ 27355333 (+) True XLOC_037174
TCONS_00073172 other upstream 47204 27282322 ~ 27282436 (+) True XLOC_037168
TCONS_00073169 other upstream 632335 26694869 ~ 26697305 (+) True XLOC_037166
TCONS_00073166 other upstream 825188 26199659 ~ 26504452 (+) False XLOC_037163
TCONS_00073165 other upstream 918262 26199624 ~ 26411378 (+) False XLOC_037163
TCONS_00073164 other upstream 1036051 26199624 ~ 26293589 (+) False XLOC_037163
TCONS_00073183 other downstream 383082 27720267 ~ 27733587 (+) False XLOC_037178
TCONS_00073189 other downstream 445319 27782504 ~ 27787376 (+) True XLOC_037180
TCONS_00073190 other downstream 480740 27817925 ~ 27822574 (+) True XLOC_037182
TCONS_00073191 other downstream 497260 27834445 ~ 27844628 (+) True XLOC_037183
TCONS_00073192 other downstream 499877 27837062 ~ 27838013 (+) False XLOC_037184

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000009_06253421_06255264.mRNA True 1455 mRNA 0.42 5 CI01000009 6253421 ~ 6255946 (-)