RNA id: TCONS_00074904


Basic Information

Item Value
RNA id TCONS_00074904
length 948
lncRNA type inter_gene
GC content 0.45
exon number 4
gene id XLOC_037167
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 26896785 ~ 27225134 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAGAGCAAACCACAGTAAATTAGTGGCATGTGGGAAGTTTaccaaaactataaaataaaataaaaacgtgcTGGGCTGTAAACTCTGTAACATTCTTACACCACACATCGCTGAGCAAAGAGGAAATTGACAACGCGGTGAGAATGCAGAGGATAAAGCCGGTTCTGGGAGGTTCAAGTCTTTTGGCTGCGTCTCTGTGTGCCGCATTAGAGAGAAGGAGCCGTTGTCTTGACAGCCCGTCACTGTGGCGACCGAGCACATTCCAGAGTCCTTCGACTTGAACATTTGCTCATCTTGAACTGGAATCTCACTTAAGATGCCAGAAAAGCCCAAGAAGTTCATTTCATGGCCTGCCGTCAAATCCCTTCTCAGAAAATCAGCTGAACTGAATCCTCCAATGCAATGCATTTAAAGAGTGGCAACATTTCCCCCCACACCTCCTCCAGGCAAAGGCACACAAATTCTAGGAGGAGTGTTTCTACTCGGCTTATCCAGGATTGGATGACGTCCATGACATCACTGGAGATTCCCAGTATACAAGGCTGACAGCAATGGCggctcagtctctctctctctctgtcttgcaGTCTTTCACCCTCCCTCAGCTCGGTGGTGGCTTGCGCTCAGGCGGTCTGGCTGGCGGTGCTCCGCAAGCCAGGCGATCATCGATCTAAATGCCGCTCCATTTAGTGTTTTGTTCCTGTTAATCTTTTGATTCTTTAGTTTGTAAATGTGTtaactagtttgtttattttgatactttgttttgtagcaggtagtggtttatttttcatagtcacgttttgttatttatttaggttagcgaaggtaagcagtggcccggaagactaatctatttttattcctttcacgGGAGTTTAGGTAAGATCTGTCCATTTAAAACAGTATAGTCAGAGACCTGTTTACCTTACCTGCCCTACCTGTCTA

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0048731 system development biological_process
GO:0048738 cardiac muscle tissue development biological_process
GO:0048468 cell development biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0022610 biological adhesion biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0007517 muscle organ development biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0030154 cell differentiation biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0048513 animal organ development biological_process
GO:0000904 cell morphogenesis involved in differentiation biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0043624 cellular protein complex disassembly biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0031589 cell-substrate adhesion biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0016203 muscle attachment biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0048869 cellular developmental process biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0030029 actin filament-based process biological_process
GO:0003015 heart process biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0060537 muscle tissue development biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0007155 cell adhesion biological_process
GO:0060047 heart contraction biological_process
GO:0016043 cellular component organization biological_process
GO:0042383 sarcolemma cellular_component
GO:0005604 basement membrane cellular_component
GO:0031672 A band cellular_component
GO:0031430 M band cellular_component
GO:0005515 protein binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00073168 lncRNA upstream 101395 26604063 ~ 26795421 (+) False XLOC_037165
TCONS_00075121 lncRNA upstream 201044 26694823 ~ 26695772 (+) False XLOC_037166
TCONS_00075119 lncRNA upstream 225514 26604325 ~ 26671302 (+) False XLOC_037165
TCONS_00075120 lncRNA upstream 269424 26604363 ~ 26627392 (+) True XLOC_037165
TCONS_00074903 lncRNA upstream 269846 26604063 ~ 26626970 (+) False XLOC_037165
TCONS_00075126 lncRNA downstream 107310 27182702 ~ 27225134 (+) True XLOC_037167
TCONS_00074906 lncRNA downstream 225272 27300664 ~ 27301565 (+) True XLOC_037169
TCONS_00074907 lncRNA downstream 239559 27314951 ~ 27323715 (+) True XLOC_037170
TCONS_00075127 lncRNA downstream 273238 27348630 ~ 27349337 (+) False XLOC_037173
TCONS_00075128 lncRNA downstream 335939 27411331 ~ 27416223 (+) False XLOC_037177
TCONS_00073167 mRNA upstream 603215 26199674 ~ 26293601 (+) True XLOC_037163
TCONS_00073161 mRNA upstream 769511 26103814 ~ 26127305 (+) False XLOC_037161
TCONS_00073159 mRNA upstream 800190 26086135 ~ 26096626 (+) False XLOC_037160
TCONS_00073157 mRNA upstream 982832 25853052 ~ 25913984 (+) True XLOC_037157
TCONS_00073156 mRNA upstream 984849 25840720 ~ 25911967 (+) False XLOC_037157
TCONS_00073173 mRNA downstream 254248 27329640 ~ 27337185 (+) True XLOC_037171
TCONS_00073174 mRNA downstream 264113 27339505 ~ 27344683 (+) True XLOC_037172
TCONS_00073175 mRNA downstream 273417 27348809 ~ 27349361 (+) True XLOC_037173
TCONS_00073176 mRNA downstream 276906 27352298 ~ 27355281 (+) False XLOC_037174
TCONS_00073177 mRNA downstream 279022 27354414 ~ 27355281 (+) False XLOC_037174
TCONS_00073169 other upstream 199511 26694869 ~ 26697305 (+) True XLOC_037166
TCONS_00073166 other upstream 392364 26199659 ~ 26504452 (+) False XLOC_037163
TCONS_00073165 other upstream 485438 26199624 ~ 26411378 (+) False XLOC_037163
TCONS_00073164 other upstream 603227 26199624 ~ 26293589 (+) False XLOC_037163
TCONS_00073158 other upstream 1040087 25856613 ~ 25856729 (+) True XLOC_037158
TCONS_00073172 other downstream 206930 27282322 ~ 27282436 (+) True XLOC_037168
TCONS_00073183 other downstream 644875 27720267 ~ 27733587 (+) False XLOC_037178
TCONS_00073189 other downstream 707112 27782504 ~ 27787376 (+) True XLOC_037180
TCONS_00073190 other downstream 742533 27817925 ~ 27822574 (+) True XLOC_037182
TCONS_00073191 other downstream 759053 27834445 ~ 27844628 (+) True XLOC_037183

Expression Profile

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