XLOC_037165


Basic Information

Item Value
gene id XLOC_037165
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 26604063 ~ 26795421 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00074903
CCAATCTAGTCGAGAGCAAGTGAAAATAATCGGAAGGAAGTGCGATGATGAGgcagaataaaaaaagaagctttttttctcccccttttttttttgcttgtttgtgaGCTTCACTCATTCAATCATGTGCAATTTGCCAGGGTAATTGAGGTGGGGCGAATAGGAAAGAGTTAAGCAATTAAGAGTTCACGGGTCGCAGCTGTGTTCTGACACGCCATCATTAGTTTTCTGACGATCTGCTTTTTTTTGTTTCCTCCCTCAGGTTTTCTCAGGCCAGGAGAGAGTTTCAGATTAGAACATCTGGAGTTTCATGTTGAAACGGCATCACTTTCCCACCGAGACCCGAGTGAAGCCATTAAGGCCAATGAAGACAGAAGAGCAAGTTTGACTGCGCCGACACACGCCGTGTTTCGCTGGAATCAAAGTCAGATGGTTCTCCTCACCGGCTCTTCCTCTTGTACTCTTCCGTAGATGTCCTCCTCCTCCTTTGGATACAAACATGCCTGATTAAGGGAAGTGGCTAAAGCTATGTTGGTGTATTACTGAAGATCTGAAACTTACCATTTGAACTGTGTGTGAGATTGCTCTCCCTCTGCTTCATCTCTCAGCATTTGTTGCTTTGCACAAAAAATCTTCCTTGTGTAACCGTGACAAGTTC
>TCONS_00073168
CCAATCTAGTCGAGAGCAAGTGAAAATAATCGGAAGGAAGTGCGATGATGAGgcagaataaaaaaagaagctttttttctcccccttttttttttgcttgtttgtgaGCTTCACTCATTCAATCATGTGCAATTTGCCAGGGTAATTGAGGTGGGGCGAATAGGAAAGAGTTAAGCAATTAAGAGTTCACGGGTCGCAGCTGTGTTCTGACACGCCATCATTAGTTTTCTGACGATCTGCTTTTTTTTGTTTCCTCCCTCAGGTTTTCTCAGGCCAGGAGAGAGTTTCAGATTAGAACATCTGGAGTTTCATGTTGAAACGGCATCACTTTCCCACCGAGACCCGAGTGAAGCCATTAAGGCCAATGAAGACAGAAGAGCAAGTTTGACTGCGCCGACACACGCCGTGTTTCGCGTGGCGGATGTGTGAAGAATGATGAAGAGAGCGACGAGAGAAAGACAGCGAGAGGGAAGGGCTGAGGGAGGATTGAATTAGGGCTGACTGAAGCGTGATGAGAGAAAACAGAGGGACCGATAATGAAGGAAAATAAACCTTATTGGTCGACTGGCTGGGAGGACAAAGAAGTGAGGGAGTTGATGGACACAGCTAGAAAAATAGCTGCCCTCACACAGAAATGCCGTCACTGCAGAAATCCTGGCTTTTGCTGGAAGACTTGCACATGATTTCATACAGAATGATGTTGTTTTACCTACTACATGTGGGGAAAATTCACC
>TCONS_00075119
GTTTTCTCAGGCCAGGAGAGAGTTTCAGATTAGAACATCTGGAGTTTCATGTTGAAACGGCATCACTTTCCCACCGAGACCCGAGTGAAGCCATTAAGGCCAATGAAGACAGAAGAGCAAGTTTGACTGCGCCGACACACGCCGTGTTTCGGCCTCTGTGAGAAGCTGACAGCCACCATGAGAAAATAGCAGACGAACAAATTCATAACACTTAAAAGAAGACATAAGAGCAGCCATTACTCTTTCTCAAACCAGACCGGCTGTCTTCCGTGCTACATGATTCAGAGGAACGGCAGTAAACGATGAAGAATGGTCTGTCGTTCTCCAAATCTGTCCATCCGGCTCTCTTTGTGTCGTTTCG
>TCONS_00075120
CTGGAGTTTCATGTTGAAACGGCATCACTTTCCCACCGAGACCCGAGTGAAGCCATTAAGGCCAATGAAGACAGAAGAGCAAGTTTGACTGCGCCGACACACGCCGTGTTTCGATGTCCTCCTCCTCCTTTGGATACAAACATGCCTGATTAAGGGAAGTGGCTAAAGCTATGTTGGTGTATTACTGAAGATCTGAAACTTACCATTTGAACTGTGTGTGAGATTGCTCTCCCTCTGCTTCATCTCTCAGCATTTGTTGCTTTGCACAAAAAATCTTCCTTGTGTAACCGTGACAAGTTCAtccaataagtttttttttttttgagtgtatctgacatgtcccgtcCCCTTCAAGATGgttcttatttgcttttcatttgatgcgcttgatctCAACCACCTTCACTGACAAAGCTGTGATAAAAATGAAACACtattgtctttttaaaaatgtatttatttttaagtggAGGAACTAAtatatgtcccaccctctctttatttttcagttgagattgtcaaacattgaataaaaaatgctcatttcaaaacacttcgcaggacctttaaaatatgaaacatacattaaacaataCTGCTATTACTATTCTTACCCACCTCAAACTTTTGAATGTCACTGTGTGTGAATAAAAcagtaaattataattttcattacATTATTAACCATTCACTAGCAAATGTTGTATTAGTATTTGTATGCC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000117761

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00074903 False 658 lncRNA 0.44 2 26604063 26626970
TCONS_00073168 False 734 lncRNA 0.46 3 26604063 26795421
TCONS_00075119 False 361 lncRNA 0.47 2 26604325 26671302
TCONS_00075120 True 722 lncRNA 0.37 2 26604363 26627392

Neighbor

gene id symbol gene type direction distance location
XLOC_037164 NA coding upstream 29187 26571229 ~ 26574876 (+)
XLOC_037163 si:dkey-111i23.1 coding upstream 99611 26199624 ~ 26504452 (+)
XLOC_037162 NA coding upstream 412639 26185088 ~ 26191424 (+)
XLOC_037161 efnb2a coding upstream 476758 26103814 ~ 26127305 (+)
XLOC_037160 arglu1a coding upstream 507437 26086135 ~ 26096626 (+)
XLOC_037167 FP101883.1 coding downstream 101364 26896785 ~ 27225134 (+)
XLOC_037168 BX928746.1 coding downstream 486901 27282322 ~ 27282436 (+)
XLOC_037169 NA coding downstream 505243 27300664 ~ 27301565 (+)
XLOC_037170 NA coding downstream 519530 27314951 ~ 27323715 (+)
XLOC_037171 GTPBP8 coding downstream 534219 27329640 ~ 27337185 (+)
XLOC_037159 NA non-coding upstream 571954 26028731 ~ 26032109 (+)
XLOC_037158 CR925716.1 non-coding upstream 747334 25856613 ~ 25856729 (+)
XLOC_037156 NA non-coding upstream 766314 25565740 ~ 25837749 (+)
XLOC_037173 NA non-coding downstream 553209 27348630 ~ 27349361 (+)

Expression


Co-expression Network