RNA id: TCONS_00073160


Basic Information

Item Value
RNA id TCONS_00073160
length 5195
lncRNA type retained_intron
GC content 0.41
exon number 3
gene id XLOC_037160
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 26086135 ~ 26096626 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCCATATTGTTTTATTCCGCAGATTCACTGGAGCAGAAAGCAACAAACACTTCTATTAAACGAGGTTATATCAAGCAATTCTACGTTTAACCAACGCACAGCGTTGCATGAAGTTGTCGCAGACCGTGCTGCATTCATAAAAACCCTTCTTAGCGCGTCAATCAGATTTAGTTGTGCAAAATATGGGACGCTCAAGGAGCCGCAGCTCGTCCCGGTCCAAACACTCAAAACACAGCCGCAAACGGAGCCGCTCCAAATCCAAATCTAAGAAAAGGAGCAGGTCGAAGGAGCCAAAGAGGAACAGACGGTCCCGCTCAAGATCCGGCAGCAGGAGGGACAGAGGAGGCTCACCGCCCGACCGAACAGACATGTTCGGCCGGACACTGAGCAAGAGAAACAACGACGAAAAACAGAAGAGAGAAGAGGAGGACAGGAGAGTAGAGATTGAGAGGCAGAGGAAGATCCGTCAGCAGGAGATCGAGGAGCGTCTGATCGAGGAGGAGACGGCCAGGCGTGTGGAGGAGCTTGTGGCGCGACGAGTGGAGGAGGAACTGGAGAAGCGGCGTGATGAGATTGAACATGAGGTCTTACGGCGAGTGGAGGAGGCCAAACGCATCATGGAAGCACAGCTTTTGCAGGAGCTAGAGAGGCAGAGGCAGGCTGAACTGAACGCCCAGAAAGCCAGAGAGGTAACGCTCGGTCGTTCGGAACACAGCGGATCTCAGCCGCAAACCACACGCCCACAGCCGTGCCACAACCTGACACTTGTTTACCCCCGAGACACTGCAGGACCAGCAGGGTAGATGCATTTGAGTAGATTAATAGAGACTAGGCAGTGAAAGTAAATAGTAATGCTTATTTCTTTAAACACATTTATGATATTTTGAGCAGACTGGTTAAGCTGTTGTTTAGGAAATgctaatatttagtttatttctgtaattaaaaataacacagaCAGAATATTGAAGGTCCAAAAGTGACTGTTCACCTAATTTACTTATAGTTTACTTTAAACATCTGCAGTTTCTGATTTATTAGTGAAAAACACCTCATACTATGGATGCAATTAATGACAACCTTTCAAAATAAAGTTCAAATAGTAGGATGCTCCAATCGGGTCTTTTTCCAGTCGATACAGAGTACCggttccttgtcatggtgatcggtcGATACTGAGcactgattctgatgcttcaagctttataatgcatcaagcattttcagttttaagcatgatacttaagtggagatcttgCCTTACCTCAGAGAATAAATTAAAGATGTTGCATATAATTCCTTAAATATTAGAAGCAACTTTAcagaacaaaatagataaaacattttaaaaatgtcaagaAAAATCACTGATaaagcaatttggaaacattgcaaatcatGGAAGAACAACTCAACATGTCTCGGAAGTTTGGAGGGCATTTGTTAAAAAGCAcacctataaatccattacttcttttCTAAGaggaaataaactaaaactggTCCATAAACTACGGTTTATTACAAAGCATATATtactataatttttattattaaatgttcaagtaaaaaattactattttttaatATCCCTTGTATTTCCTGCCAGGATTAAATGAACTTAGAATATAGGTGAGAAcgcaaaaaatacatttctgatATTTCAGTTCTTAtgtgtcctctgcttgtaaactcagaAACAAACAATTGTGATCAGTTCATGAGATCGCCCAGATTAGTGATTATCGGCCGATGCAGATTGGTCAGAGCATTCCTATAAATTATGACAGAAAAACGACTAAACTttgaataaatagtttttaattggACAACAATTGGACATTTTCTTTGTTACTaaaatttaatttagatattGAAATGCAATTCAaagaaactgaaaagaaaatttcATGCAGTTTGGGGCGTGATTTTATTGGTTGCTTAAATAAGGGGATTTTATGATTGagacttatgccgagttcagactgcatgattttcaaagtagtcgtgtcacagatgttttcacactgcatgactatctgggctagtgttttgtcactgctttgtttaaactgcaagatggatcggcgacaggggctttcacattgcatgactttacaataggaagaatcgccgacaacttcgtccaaactacgtctcacagccaaaaacacatagtatatcttttgttgttaactacataacgagaaagatgCCTtaaatggggtagaaaatgtacttatttgttcacctgggtttgaagggaattagcaatttctcctctaCTTTCTTTAACTttatgtatgaaacgtcaaacagacacgggtgctcctgtcaaacctccactcgttttcctccatttcttgggtccaaataaactgaaaaggagcaattttaacttctccccctgcCTCCCGCTGGCCAGCAGGTACACACTAAcaagtaaatgctgctctctcattggctgaagGTGATCGCCGATGatatttcagtcaaaactcatttcacacattAGGATTTGAATCGCAGAcggctccagatatttagcatgccaaatatctcccaggcatcagcgactcattgatgattctctcagatcgcgtctttgatagttcaaactgtgtgattgtcactcacgtgcacaagcATCGATTTGCCTGATATCAGGCATTtctctgcgatttctcaaaacctgtcggcgagtcaaattcggggctaaaatcatgcagtctgaactaggcattagtttACTCTGCACAGAAAAGCTCTGTACTTTATTTCCTAATACTTCAATGTGACTTGACTGAATCAAACGCACCTCAAGTGCCCTCTTGGGGGTTTCAAGTGAATGTTTTGCCACGGCTGTGATAGACCAGTATTACGTTTCtcatctttttcttttcctttttatttccTACCCCTACCCTGCTCCTTTTTTACTCCTATCTTTTATAAGTTTACTGTCACCTATGTATGGAACTGTTTGTCTTCAATAAAACGCTTTTGTTAAAAAGGTCACTCTGCGTTCAAACCAGGCCTGTTTTTGTTCATGAGCTGTCAGTGTGAACATCCGCCATTATACACCTTGAGAGGTCAAGACATAATGCTGTTTCGGATGTTCCAAACACACAAGACCTTTTGAGGCCACCAGACCGCACATAAACTTGTTAATTTGCTTAATCCATAGCTTGTAATTCCACCCATACCGTAAAGGAGGGTTACTGTACTGTAATTGTAAAGACGCAATGAGTTATGAACGGGAAACTAATTCCCTTCCACAAGCACACACAAAATCCAGCGGCTCAGCACTAATAGGGTTAGAAATGTGCCCTCCTTCTGTACGTTTCAGATTTGTGCCCATCATCTGTAGCCCTGGTACTGAACCATTAAATGAATCTGTGTTATTGTAGATTTAGCGTTTGCACATTTTAGCCTCATTTGCAACATTAATCACGAAACGCTCCACTCTTGCTATTGCTGCTCCTCCATTGCtgtcttttgtgttttatattgatttatttttgtaactTCACTTTCCTTTGACTCTTCCGTTCTTCTGACGTCATTAAAAGTGCAgtgttttaaatgtacttttgtgTCTTCACGATTTGCTTTTCCTCAGGAGTGCTGGCATACgggtacacatacacacacatgcaaacacacacacaaacaacaccacacacacaagcCACTGAGCTTAGACGCCAACACAtcactgtttttgttttcagaCCAACACCTCTAACAATTGATCCCACCTTTGTGTTTTTACAGTCTTTAACATCGTTTAACATTAATAGCCTGACGTCCCCACACGGTAATGTTGTATGATTAACATAATTCCTTTTCCTGGACTTTGCTATATATACTGCATGTGGTGTTGCTGTGTAAGAGCACTAGCTCGTGCTAGCAGCTCAGAGATTTTTAAAGGGGAGGTGCTGCGCTGTCCAGGACGGGACACACGGGACCAGGCAGTAAATACTCACCCCCTTTAATCAGCAGTTGTGTAGGTACAGTACACAGTCAAAGGAGAAAGGCGTAGGTATACGAGCATCGGTGAGCCACTACTATTCACTCTCTCCTTTATTTGAGTTAATCTTTCTTTGTCtctctcattttctttttgaaactTCTTGCTTATGGATGctgatagtaaaaaaaaaagaataaaaataaagagagagaTGTAACGAgatgattttattatatttttatctctttttttttcctttctcatctgcaaacgaaTGAGATTCTGCGATAGTTGTCGATGTGTTGTCTTTACATACCTGTTGTGTATGGATGTTAATGAATGTGTAAATAATTGTTTGGATGTCTAAATATTGTGGCGGGGATAAAGGTGTGACTGAATACATCCGTGGGTGGGTTTTTTTGCTCATTGTTGCATACATAGAGGTTAGCTTCAGACTTTTGAATCTGCAGATCGAAATGTGGAGAGCGGGTGAAAGAGTGTGTGAGTGTAGCTGTGTACCTGTTTGTGCAAGTGTAGACATGTTTGAGTGTGCAACGTGAGTTTATGGGGACTTCTTTCATTGGATGTGTTTGCCCTTGCTAACATGTCACCATGTCTCCCCTTTAGGAGGAAGAGAAATCCAAACGAGTGGAGCTCGAGAGAATTTTGGAAGAAAACAACCGAAAGATTGCTGATGCTCAGGCTAAACTGgCTGAGGATCAGCTACGTATAGTAGAAGAACAAAGGAAAATCCATGAGGAACGCATGAAGCTTGAACAGGAGAGGCAGAAACAACAGAAAGAGGAACAGAAGATGATATTGGGGAAGGGCAAGTCCCGACCTCGTCTCTCCTTCTCTCTCAAAGCTACAGAGTgatttctcttctcttctcttctcttctcttctcttctcttctcttctcttctcttctcttctcttctcttctcttcggATGTGAGCTTCATGTTGAAGTGAATCAGAGTCTCAAAGAGAGTTCTGCCCTGTGTGCTCTGCCCTCAAGAATTGCCCTTCATAATCCCAggaattcaaaaaagaaaaaaaacatttggtcCTCATGCTTCAAAATCGGACTTGCAGCAGCACCACCACAGACTTTCAAATTGGCTGCCATCATTTGCAATTCTTCAATGTATTATATTGATATTTGACACCGTTATGCTGaaggcacatttaaaaaaacagaaaaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005654 nucleoplasm cellular_component
GO:0005739 mitochondrion cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2914 Predicted to be active in mitochondrion and nucleoplasm. Is expressed in brain. Orthologous to human ARGLU1 (arginine and glutamate rich 1).

Ensembl:

ensembl_id ENSDART00000142272

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00074900 lncRNA upstream 54127 26028905 ~ 26032109 (+) False XLOC_037159
TCONS_00075117 lncRNA upstream 54178 26028731 ~ 26032058 (+) False XLOC_037159
TCONS_00075118 lncRNA upstream 54178 26029550 ~ 26032058 (+) True XLOC_037159
TCONS_00073149 lncRNA upstream 260024 25775816 ~ 25826212 (+) False XLOC_037156
TCONS_00075115 lncRNA upstream 336289 25567599 ~ 25749947 (+) False XLOC_037156
TCONS_00073162 lncRNA downstream 24695 26120881 ~ 26121858 (+) False XLOC_037161
TCONS_00073163 lncRNA downstream 25177 26121363 ~ 26124026 (+) True XLOC_037161
TCONS_00074901 lncRNA downstream 88902 26185088 ~ 26191424 (+) True XLOC_037162
TCONS_00074902 lncRNA downstream 475043 26571229 ~ 26574876 (+) True XLOC_037164
TCONS_00074903 lncRNA downstream 507877 26604063 ~ 26626970 (+) False XLOC_037165
TCONS_00073157 mRNA upstream 172252 25853052 ~ 25913984 (+) True XLOC_037157
TCONS_00073156 mRNA upstream 174269 25840720 ~ 25911967 (+) False XLOC_037157
TCONS_00073155 mRNA upstream 249789 25832329 ~ 25836447 (+) True XLOC_037156
TCONS_00073154 mRNA upstream 250027 25777270 ~ 25836209 (+) False XLOC_037156
TCONS_00073153 mRNA upstream 258357 25776971 ~ 25827879 (+) False XLOC_037156
TCONS_00073161 mRNA downstream 7628 26103814 ~ 26127305 (+) False XLOC_037161
TCONS_00073167 mRNA downstream 103488 26199674 ~ 26293601 (+) True XLOC_037163
TCONS_00073173 mRNA downstream 1233454 27329640 ~ 27337185 (+) True XLOC_037171
TCONS_00073174 mRNA downstream 1243319 27339505 ~ 27344683 (+) True XLOC_037172
TCONS_00073175 mRNA downstream 1252623 27348809 ~ 27349361 (+) True XLOC_037173
TCONS_00073158 other upstream 229507 25856613 ~ 25856729 (+) True XLOC_037158
TCONS_00073146 other upstream 748509 25330971 ~ 25337727 (+) True XLOC_037155
TCONS_00073141 other upstream 1005931 25079209 ~ 25080305 (+) True XLOC_037153
TCONS_00073140 other upstream 1012037 25073539 ~ 25074199 (+) True XLOC_037152
TCONS_00073139 other upstream 1018506 25066661 ~ 25067730 (+) True XLOC_037151
TCONS_00073164 other downstream 103438 26199624 ~ 26293589 (+) False XLOC_037163
TCONS_00073165 other downstream 103438 26199624 ~ 26411378 (+) False XLOC_037163
TCONS_00073166 other downstream 103473 26199659 ~ 26504452 (+) False XLOC_037163
TCONS_00073169 other downstream 598683 26694869 ~ 26697305 (+) True XLOC_037166
TCONS_00073172 other downstream 1186136 27282322 ~ 27282436 (+) True XLOC_037168

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU62158 False 2527 lncRNA 0.42 3 CI01000009 6915187 ~ 6940792 (+)
rainbow trout (Oncorhynchus mykiss) TU102824 True 291 lncRNA 0.47 1 NC_048565.1 83342021 ~ 83342311 (+)
tiger barb (Puntius tetrazona) TU102824 True 2897 lncRNA 0.45 2 NC_056707.1 12005701 ~ 12009922 (+)