RNA id: TU62158


Basic Information

Item Value
RNA id TU62158
length 2527
lncRNA type antisense_over
GC content 0.42
exon number 3
gene id G54626
representative False

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 6896121 ~ 6940792 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGCTTGAGCATCAGCAATCTTTCGGTTGTTTTCTTCCAAAATTCTCTCCAGCTCCTCTCGTTTGGATTTTTCTTCCTCCTAAAGGGGTGACACGGTGACATGTTAGGGCGGGCAGACAAATCCACTGAAACAAGCCCCCATAAACCCAGTTGCACACTCAAACACGTCTACACTCGCACAAACAGGTACCAGTCAGCGACACTCGCACAATCTCTTTCACCTGCTTTCACACACTTTCCACATTTCACATTCTGAACTGCAGCATCAAATGTCTGAAGCTAACCTCTATGTATGCAACAATAAGCAAAAAAAAAAAAAAAAAACCCACCCACGAATGTATTCAGTCACACCTTTAATCCCCACCACGTTTAAATATATATACACATCCAAACATTCATTTATGCATTCATTAAGATCCATACAGAACAGGTATGTAAAAGATAACACATCGACAACTAACGAAGAATCTCATTCGTTTGCAGATGAAAAAAAAAAAAAAAAAAATCAGCTCGTTCTCTCTCTTATTTTTTTTATTTATCAGCATCCATAAGCAAGAAGTTTCAAAAGAAAATGAGAGAGACAAAGAAAGATTAACTTAAATAAAGGAGAGAGTGAATAGTAGTGGCTCACCAATGCTCGTATACCTACGCCTTTCTCCTTTGACTGTGTACTGTACCTACACAACTGATGATTAAAGGGGTGAGTATTTACTGCCTGGTCCCGTGTGTCCCGTCCTGGACAGCGCAGCACCTCCCCTTTAAAAATTTCTGAGCTACCAGCACGAGCTAGTGCTCTTACACAGCAACACCACATGCAGTATATAGCACAGTCCAGGAAAATGAATTATGTTAATCATACAACATTACCGTGTGGGGACGTCAGGCTATTAACGTTAAAGGATGTTAAAGACTGCAAAAACACAAAGGTGGGATCATTCGTTAGATGTGTTTGTTTGAAAACAAAAACAGTGATGTGTTTGCGTCTAAGCTCAATGGCACAGTAACGTTGAGTGTGGATGTAGAAGTGTGTGTGTGTGTGTCTGTGTGTGTGTACCCGCACGCCAGCACTCCTGAGGAAAAGCAAATTGTGAGGACACAGAAGTACATTTAAAACACTGCACTTTTAATGACGTCAAAACGGAAGAGTCAAAGGAATAATGAAGCTAGAAATCTAAAAAAAAAAAAAATCAGCAATTAATAAATATAACACAGATGACAGAAATGGATCAGCATTGAAGGGAGGGGTGGAGCGTTTTCTGATTGATGGTGCAAATGAAGACCAAATCATGTGCAAACGCTAAATGTACAACAATACAGATTCATTTAATGGTTCAGTACCAAGGCTACAGATGACGGGGACAAATCTAAAATGTACAGAAGGAGGGCACATATCTAACCCTATTAGTGCTAAGCCGCTGAATTTTGTGTGTGCTTGTGGAATGGAATTAGTTTCTCGTTCATAACTCATTGCATCTTTACAATTAGAGCACAGTAACCCTCCTTTTTATGGTATGGGTGGAATTACAAGCTATGGATTTAGCAAATTAACTAGTTTAAGTGTGGTCTAGTGGCCACAAAAGGTCTTATGTGTTTGTAACATCCAAAACCACATTATGTCTTGACCTATCAAAGTGCATTATGGTGGATGTTCACACTGAAAGCTCATGAACAAAAAAAGGCCAGGTTTGAATGCTGAGTGACCTTTATAAGAAAAGCGTTTTATTGAAGACAAACAGTTTCATACATTGGTGACAGTAAAACGATAAAAGATATGAGTAAAGAGAGCAGGGTAGGGGTGAAAAATAAAAGGGGAGAGAAAAGATGGGAAATATAATATTGGTCCCTCACAGCCGTGGCAAAACATTCACTTGAAACCCCTGAGAGTGCACTAGAGGTGTGTGAGATTCAATAAAACGAGGACTCCATCATCCAACATCCTTAAATACTAGCGTTCCCTAGACAGCAGCTCAACTGAACTTCTCTAAGCATCACATCACACCTTGTAAAAGTTGCTTTCTGTAATTAATTTAACTCCCCACCCAATCAATTGAGCTTACTTCCATTGCTAGCCTGCATCTCCTGCTCTGTCTCGGGGGGAAACGAGTGTCAGGTTGTGCAACGGCTGCGAGTTTGCGGTTTGCGGCTGTTCTCCGCTGCGTTCCGAACGACCGAGCGTTACCTCTCTGGCTTTCTGGGCGTTCAGTTCAGCCTGCCTCTGCCTCTCTAGCTCCTGCAAAAGCTGCGCCTCCATGATGCGTTTGGCCTCCTCCACCCTCCGCAAGACCTCATGCTCGATCTCGTCACGCCGCTTCTCAAGCTCTTCCTCCACCCGCCGCGCCACAAGCTCCTCCACGCGCCTTGCAGTCTCCTCCTCGATCAGACGCTCCTCAATTTCTTGCTGACGGCTTGCTTTCTGTCTGTACTCTTACAGGTTGCCTCGATGTGTTACAGTTAATCTCCTGAAAATACTTGCATTACGATAATAACCCTTAGCAGTGTGTTGGAGTAGGCTACATTGAACCAAGCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62163 lncRNA upstream 1591 6805307 ~ 6913596 (+) False G54627
TU62239 lncRNA downstream 5031 6945823 ~ 6946041 (+) True G54687
TU62246 lncRNA downstream 16927 6957719 ~ 6957928 (+) True G54694
TU62178 lncRNA downstream 129959 7070751 ~ 7110641 (+) True G54632
TU62180 lncRNA downstream 169559 7110351 ~ 7115443 (+) True CI01000009_07111833_07115320
TU62305 lncRNA downstream 179703 7120495 ~ 7120779 (+) True G54752
CI01000009_06212264_06213131.mRNA mRNA upstream 701372 6212264 ~ 6213815 (+) True CI01000009_06212264_06213131
CI01000009_06205817_06207701.mRNA mRNA upstream 707476 6205817 ~ 6207711 (+) True CI01000009_06205817_06207701
CI01000009_06195742_06204011.mRNA mRNA upstream 710838 6195742 ~ 6204349 (+) True CI01000009_06195742_06204011
CI01000009_06130188_06193279.mRNA mRNA upstream 721783 6130064 ~ 6193404 (+) True CI01000009_06130188_06193279
CI01000009_06002120_06017019.mRNA mRNA upstream 897405 6002120 ~ 6017782 (+) True CI01000009_06002120_06017019
CI01000009_06943591_06952628.mRNA mRNA downstream 832 6941624 ~ 6953067 (+) True CI01000009_06943591_06952628
CI01000009_06975071_07009147.mRNA mRNA downstream 34279 6975071 ~ 7009417 (+) True CI01000009_06975071_07009147
CI01000009_07051811_07054331.mRNA mRNA downstream 109926 7050718 ~ 7054625 (+) True CI01000009_07051811_07054331
CI01000009_07091022_07092696.mRNA mRNA downstream 150126 7090918 ~ 7092801 (+) True CI01000009_07091022_07092696
CI01000009_07101768_07105835.mRNA mRNA downstream 160477 7101269 ~ 7106009 (+) True CI01000009_07101768_07105835
TU61103 other upstream 666795 6245564 ~ 6248392 (+) True G53651
TU61110 other upstream 982386 5860302 ~ 5860756 (+) True G53655
TU60796 other upstream 1376133 5522242 ~ 5522356 (+) False G53388
TU60791 other upstream 1376133 5535245 ~ 5538095 (+) False G53388
TU58748 other upstream 3707263 3202905 ~ 3207924 (+) True CI01000009_03202999_03207060
TU63847 other downstream 2188508 9129300 ~ 9130286 (+) True G56100
TU64139 other downstream 2912567 9853359 ~ 9853515 (+) True G56323
TU65813 other downstream 4819994 11760786 ~ 11760858 (+) True G57782
TU65844 other downstream 4993150 11933942 ~ 11935251 (+) False G57811
TU65845 other downstream 4993150 11933942 ~ 11935251 (+) False G57811

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00073160 True 5195 lncRNA 0.41 3 NC_007120.7 26086236 ~ 26096186 (+)
rainbow trout (Oncorhynchus mykiss) TU102824 True 291 lncRNA 0.47 1 NC_048565.1 83342021 ~ 83342311 (+)
tiger barb (Puntius tetrazona) TU102824 True 2897 lncRNA 0.45 2 NC_056707.1 12005701 ~ 12009922 (+)