CI01000009_06205817_06207701 (TEX30)


Basic Information

Item Value
gene id CI01000009_06205817_06207701
gene name TEX30
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 6205817 ~ 6207711 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_06205817_06207701.mRNA
GAGAATGTGAGAATCCCGTTCGAGCAGAAAGAGCTGGATGGTGTGTTCACGGTCCCTGCTGACGTCACCGAGGAACGCACAGCTATGGTGTTGACGCACGGCGCGGGGGGAGACATGCACAGCAAACAGCTGGAAAGTCTCGCGCACGCTCTCGCTCGTTCTGGTGTTTTGTGCCTGCGATTCACCTGCAGGGCGGTGAACTTTCCGTATAGAGTCAGAGCTTATAGAGCCGTTGTGGATTACTTAAGAAGCCATGAGAGATTTGCACCAGACAGCATTTTCTTGGGAGGGCGCTCTATGGGTGCTCGTACAGCTGTTGCTGTGTGTGAACATATGTGTAGACAGAAGGATGTAGTCCAGGGTGTTCTGTGTTTGTCATTCCCACTGACTCTACCAGGAAAACCACTAACATATGTTGAGCGGAGCCGAGACCTGTGTGAGCTCTCACAAACTTCTGTGATGTTTGTTTCTGGCACTGCAGATAACATGTGTGAACAGAGACTTCTACAAAATATCATGCATGTCATGAATAGCCCTTCTGCCGTTCACTGGGTCAAGGATGCAAACCATGGACTCAAAGTACGTGGCAGAACAGAAGAATCAGTACTGGAGGAAGTCAATCCACAGATTATTGCATGGGTACTACAAAACAAATGAATGTACGTTT

Function

symbol description
tex30 Predicted to enable hydrolase activity. Orthologous to human TEX30 (testis expressed 30).

NR:

description
C13orf27

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_06205817_06207701.mRNA True 667 mRNA 0.49 4 6205817 6207711

Neighbor

gene id symbol gene type direction distance location
CI01000009_06195742_06204011 KDELC1 coding upstream 1468 6195742 ~ 6204349 (+)
CI01000009_06130188_06193279 STXBP5L coding upstream 12413 6130064 ~ 6193404 (+)
CI01000009_06002120_06017019 GTF2E1 coding upstream 188035 6002120 ~ 6017782 (+)
CI01000009_05992944_05994452 CRYGS, CRYGS1, CRYGS2 coding upstream 211325 5992944 ~ 5994492 (+)
CI01000009_05983361_05989883 TBCCD1 coding upstream 215234 5983361 ~ 5990583 (+)
CI01000009_06212264_06213131 NA coding downstream 4553 6212264 ~ 6213815 (+)
CI01000009_06943591_06952628 NA coding downstream 733913 6941624 ~ 6953067 (+)
CI01000009_06975071_07009147 ARHGAP15 coding downstream 767360 6975071 ~ 7009417 (+)
CI01000009_07051811_07054331 NA coding downstream 843007 7050718 ~ 7054625 (+)
CI01000009_07091022_07092696 NA coding downstream 883207 7090918 ~ 7092801 (+)
G53666 NA non-coding upstream 110212 6065067 ~ 6095605 (+)
G53733 NA non-coding upstream 160094 6045521 ~ 6045723 (+)
G53723 NA non-coding upstream 169388 6036196 ~ 6036429 (+)
G53675 NA non-coding upstream 310205 5859197 ~ 5895612 (+)
G53646 NA non-coding upstream 359993 5844049 ~ 5845824 (+)
G53661 NA non-coding downstream 7362 6215073 ~ 6215460 (+)
G53669 NA non-coding downstream 7957 6215668 ~ 6244368 (+)
G53886 NA non-coding downstream 312188 6519899 ~ 6530269 (+)
G53890 NA non-coding downstream 329438 6537149 ~ 6537383 (+)
G53901 NA non-coding downstream 362700 6570411 ~ 6570613 (+)
CI01000009_05931829_05943829 KCNH3 other upstream 273016 5931718 ~ 5943899 (+)
G53388 NA other upstream 666763 5522242 ~ 5540638 (+)
CI01000009_03202999_03207060 MPC2, MPC2.S other upstream 2996833 3202207 ~ 3208984 (+)
G51529 NA other upstream 3143230 3062033 ~ 3062587 (+)
G51274 NA other upstream 3855331 2255099 ~ 2350486 (+)
G53651 NA other downstream 37853 6245564 ~ 6248392 (+)
G56100 NA other downstream 2921589 9129300 ~ 9130286 (+)
CI01000009_09853929_09854476 SAP18 other downstream 3645648 9853929 ~ 9856587 (+)
CI01000009_11761868_11765848 ORMDL1.S, ORMDL1 other downstream 5553075 11761606 ~ 11766944 (+)
G57811 NA other downstream 5726231 11933942 ~ 11935251 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location