G53661


Basic Information

Item Value
gene id G53661
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 6215073 ~ 6215460 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU61118
GGTTTTCACAAGTGACACCACCCAAAAGGAGGACAGAATTCTCCTTAGTTTTTAATCTTCTTCATAATACCAGTGACTGCTGTGAAATTGAGACCATTTTACCAATCGCACTAAGACATTTAAAATGACACCAAACATGAAAGGAATAAACAATAGATACACCAGATACATTATACTTCTTGGAGAACTTTCAGTGACTTGAGTCAGGGGGAAAGGAAGGAGGGTGTGTGTGTTTTGGGGGGAGGGCTATTGCCTCCTGTAGATGTGTGAGGGCAAGGCGTTGTCCTATGCTATTTCTTTGAGATCTTCTCTCCAGATAAGCTTTATTGCTTTATTGCAGGGTGCTTGATCTCAGTTTTTGTCTTAGCAGGAAAATCAAGTCTTACAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU61118 True 388 lncRNA 0.49 1 6215073 6215460

Neighbor

gene id symbol gene type direction distance location
CI01000009_06212264_06213131 NA coding upstream 1258 6212264 ~ 6213815 (+)
CI01000009_06205817_06207701 TEX30 coding upstream 7362 6205817 ~ 6207711 (+)
CI01000009_06195742_06204011 KDELC1 coding upstream 10724 6195742 ~ 6204349 (+)
CI01000009_06130188_06193279 STXBP5L coding upstream 21669 6130064 ~ 6193404 (+)
CI01000009_06002120_06017019 GTF2E1 coding upstream 197291 6002120 ~ 6017782 (+)
CI01000009_06943591_06952628 NA coding downstream 726164 6941624 ~ 6953067 (+)
CI01000009_06975071_07009147 ARHGAP15 coding downstream 759611 6975071 ~ 7009417 (+)
CI01000009_07051811_07054331 NA coding downstream 835258 7050718 ~ 7054625 (+)
CI01000009_07091022_07092696 NA coding downstream 875458 7090918 ~ 7092801 (+)
CI01000009_07101768_07105835 NA coding downstream 885809 7101269 ~ 7106009 (+)
G53666 NA non-coding upstream 119468 6065067 ~ 6095605 (+)
G53733 NA non-coding upstream 169350 6045521 ~ 6045723 (+)
G53723 NA non-coding upstream 178644 6036196 ~ 6036429 (+)
G53675 NA non-coding upstream 319461 5859197 ~ 5895612 (+)
G53646 NA non-coding upstream 369249 5844049 ~ 5845824 (+)
G53669 NA non-coding downstream 208 6215668 ~ 6244368 (+)
G53886 NA non-coding downstream 304439 6519899 ~ 6530269 (+)
G53890 NA non-coding downstream 321689 6537149 ~ 6537383 (+)
G53901 NA non-coding downstream 354951 6570411 ~ 6570613 (+)
G53903 NA non-coding downstream 361256 6576716 ~ 6577142 (+)
CI01000009_05931829_05943829 KCNH3 other upstream 282272 5931718 ~ 5943899 (+)
G53388 NA other upstream 676019 5522242 ~ 5540638 (+)
CI01000009_03202999_03207060 MPC2, MPC2.S other upstream 3006089 3202207 ~ 3208984 (+)
G51529 NA other upstream 3152486 3062033 ~ 3062587 (+)
G51274 NA other upstream 3864587 2255099 ~ 2350486 (+)
G53651 NA other downstream 30104 6245564 ~ 6248392 (+)
G56100 NA other downstream 2913840 9129300 ~ 9130286 (+)
CI01000009_09853929_09854476 SAP18 other downstream 3637899 9853929 ~ 9856587 (+)
CI01000009_11761868_11765848 ORMDL1.S, ORMDL1 other downstream 5545326 11761606 ~ 11766944 (+)
G57811 NA other downstream 5718482 11933942 ~ 11935251 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_029006 NA non-coding NC_007115.7 CM002888.2 40711862 ~ 40937754 (-)