G53669


Basic Information

Item Value
gene id G53669
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 6215668 ~ 6244368 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU61126
TTAAGCATATAAAAAAGTAAATACAACATGGACATTACATGTAGGCTAAATATATTTAAAGTTAATTTTTCTCATCCATTTGCCAAAAAAAAAGAAACATTTTTCCATTAGTTGTCATATTGATTGAACTTTCGGTGGAATTTTGCTCACTTTGCAATTGTTTAATCAACTTTACAATGTACAGAAACAAAGTCTAGTTGGCTTTATTAGAGCTGAGTTTACACCATAACCTGTCCCAGAATGCCTCATGCATCTCTGGGTCCTGTGGCCAGTCCAGATAGGTTCTAGTTTTTACCAGCCGGGCCAGTCTATGATGGGAGGATAGCAAGCGAGACGGAATCATTTCTAGGAAGACCAGGATAAGAATGTCCCTGTGTTCTACCTGGAGCCTGTAGGTGGCCAGCTGCATCTCCAAAGAACACCAGTTGCTACCGAGGTAGTTGCGACTGATGAGACAAAGAGTCTGACAACTTGCGTAGATGCTGTCTGTGATGTTTTCCACAATGTCTTCTCCCAACTGAAAGTCCCGACTATGCAGACAGAGACGCAAAAACGGAGGGCCGCGCCTCTCTAAGTTCGGAAGAAGTTCCTCCATGACCCAGTGTTCATCTTTAGCGCTGTAAGACACGAAAACATCATAGCGGTACTGATGTTTACCGTTCACACGCAAAGCCTCTCTGAACCATCCGCTGGCGATGTGATAGAAAGGCGCAATGTATTGGCCTGCAAACTTATATGTCAGTACCACAATAATAAAAATACACAAAAATGCAGAGGTGGAGGCAAAGAACACAAATTCGATTTCAAATGAGCAGTTCTCCTTAGCATAACCAATAAAGTTGAGGTGGTCAATTCCATTGTCACTCAAACACTGCAGTTCTTTCATGGTGGGGTTGAACATGTCAACCTGCACCTTACTGTTGTCCTTCACCCATGAGACCAGCCACGCATTATCACAACTGCAGTACAGACCCAAGCCCTGAAGACAGAGGTATTTCAAACTAGTGAGATGTTCCACCAAGTTTTGAAGAACATTGACGTTGTCTTTTAGAATGAGCACTAGACCTGTCAGTGCCTTTAAATCTTTGGTCAGACTTCCATCCAGAAAGAAGAATCTGCAGTTCGCCAGGATCAGCGTCTGGAGTTTGGTCAAATTGTGAAACATTACGGCCACGTTTGGCTGCTTAGTCAATTCAATGTTTTCCAGTTTTAAGGTTTTTAAATGAACAAGCTGATTGATTACAGCCAAGTCTCCAATATCATCTGAGAACACTGAGTTAAAGTCCAGATTGACGACCGATCTGACATATTTCCCAATGAATTCATTTCCACAGCTCACATATGCTGCATCTATCTGAAGTGTGACTACAGATGTCAAGAGTGAACTGTTGCAGTCCTCAACAGTCACATATTGACCTTTGATGTGTAAGTTTAGGGCCTGATCCAGTGTATTATTACTCCCGATCACAAGCTGCATTGGTCTCAGGCCTGAACTAATTAAAATGTTACTCAAATTATGTGGAATTATGCCAAATATATCAGATAAATGCAGCTTGATTGGTGACATGTCAGGTGGGAAGTTCAGATCTCCCAGCAGAAGTGTGCTAAGGTTAATAAGATGTCCAAATGAATTAGATTCGATATGAATAATAGGATTTTCTTGGAGATCTAGGACCATTAGTCCATATAAACCACTGAATGTGTGTTGATAAATGTAAGATAACTTGTTGCTACAGAGATATAGCTCTTTCAAATTGTTCAATCCAAAGAAAGCAAAATCTTCTATGTTAGAAATGTGATCTGTGGATAAATCTAGAATTTCAAGTTCTGCGAAACACATAAATTGGTATGAAACTATCTCATCTATCTTATTTGAGCTTAGAAACATAAAGGAAAGCTGTTTGACTATATGTGGATCTGAAACACAAAGAGATTGGAAATCATTTGGTCTAAGCTCATGCTTAGCAATGTTAACCAAAGTGAGGTTCCTGAAAATCTGAAAGAACGAATATACATCTAAGAGGTTTACAGGTAATAATAATTTTTTGAGATTAATCGTCTTAACATCTTCACAGCCATCTGAGATATTAGTAGGAGTCAGTGGCAAGTTAATAGTCTCATAAAAAACTTGAAAAGACTCAATCGAATATAACTTTGCTGCTGTACACAAATCATCAATTTTAAGTACATCCACCATGACAGTCAAAGTATTGATTTTATATACTCCAATTAAAGAAAGAACTCTGAGTAAATCAGAGGACAAGCGTAAGTGAAACACAAACAGATTTCCAAAAACTTCCAAAGCTCCTTCATCTACATGCTCTAATATTCCAAGATACAATTCTACCTCTTCAATGTTTAACACAGTAGATATGTCACCATGAGAGGTGTTGAAAACTGAACAGTTTGGGTACTGAAGTCTATTTAATGTTTGTTCACTTAGATAAAACACCTTCAGTGATTTTACATTTGCCAGTCGACACAGAACCTCAGATATATCCTTCAAACACATTTCGAATAAGTGTAATTTTTGCAAGTGAGGAATCATTTCAAAAACATTTGGTGCCAATAATGATAATCTATAGTTTGAAAGATGCAATGTGTTAAGTGAGGGAAGGCGACTGAAATCAAGAGCTACCTCACAACAGCCTGTTGAAGCCGAGTTCATTAATTTGAATGAAGTTACATTTGTCAAACCATTAAAAGCTTCCGAAGGGATCTCTGAAAAACATCCATTAATTTCAAGTTAATCCAGAGAAACAAAACGTGCGAATGAGTCTGGAGCCAAGGCACCGTGGCAGTCTCGGTCCATTTGAATGCAGAGGATCCGTAAGTTTGATGGAAGTTTATGAAGGTCTTCTGTAATGTCAGTGACATGATGGCAGAAGGCAGAGTTTGTTTTTCCAGCACAAGTTTTAGCAACAGGAAACTCTTCCGCNNN

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU61126 True 2941 lncRNA 0.39 2 6215668 6244368

Neighbor

gene id symbol gene type direction distance location
CI01000009_06212264_06213131 NA coding upstream 1853 6212264 ~ 6213815 (+)
CI01000009_06205817_06207701 TEX30 coding upstream 7957 6205817 ~ 6207711 (+)
CI01000009_06195742_06204011 KDELC1 coding upstream 11319 6195742 ~ 6204349 (+)
CI01000009_06130188_06193279 STXBP5L coding upstream 22264 6130064 ~ 6193404 (+)
CI01000009_06002120_06017019 GTF2E1 coding upstream 197886 6002120 ~ 6017782 (+)
CI01000009_06943591_06952628 NA coding downstream 697256 6941624 ~ 6953067 (+)
CI01000009_06975071_07009147 ARHGAP15 coding downstream 730703 6975071 ~ 7009417 (+)
CI01000009_07051811_07054331 NA coding downstream 806350 7050718 ~ 7054625 (+)
CI01000009_07091022_07092696 NA coding downstream 846550 7090918 ~ 7092801 (+)
CI01000009_07101768_07105835 NA coding downstream 856901 7101269 ~ 7106009 (+)
G53661 NA non-coding upstream 208 6215073 ~ 6215460 (+)
G53666 NA non-coding upstream 120063 6065067 ~ 6095605 (+)
G53733 NA non-coding upstream 169945 6045521 ~ 6045723 (+)
G53723 NA non-coding upstream 179239 6036196 ~ 6036429 (+)
G53675 NA non-coding upstream 320056 5859197 ~ 5895612 (+)
G53886 NA non-coding downstream 275531 6519899 ~ 6530269 (+)
G53890 NA non-coding downstream 292781 6537149 ~ 6537383 (+)
G53901 NA non-coding downstream 326043 6570411 ~ 6570613 (+)
G53903 NA non-coding downstream 332348 6576716 ~ 6577142 (+)
G54433 NA non-coding downstream 388176 6632544 ~ 6632778 (+)
CI01000009_05931829_05943829 KCNH3 other upstream 282867 5931718 ~ 5943899 (+)
G53388 NA other upstream 676614 5522242 ~ 5540638 (+)
CI01000009_03202999_03207060 MPC2, MPC2.S other upstream 3006684 3202207 ~ 3208984 (+)
G51529 NA other upstream 3153081 3062033 ~ 3062587 (+)
G51274 NA other upstream 3865182 2255099 ~ 2350486 (+)
G53651 NA other downstream 1196 6245564 ~ 6248392 (+)
G56100 NA other downstream 2884932 9129300 ~ 9130286 (+)
CI01000009_09853929_09854476 SAP18 other downstream 3608991 9853929 ~ 9856587 (+)
CI01000009_11761868_11765848 ORMDL1.S, ORMDL1 other downstream 5516418 11761606 ~ 11766944 (+)
G57811 NA other downstream 5689574 11933942 ~ 11935251 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location