RNA id: TCONS_00073154


Basic Information

Item Value
RNA id TCONS_00073154
length 3606
RNA type mRNA
GC content 0.52
exon number 9
gene id XLOC_037156
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 25565740 ~ 25837749 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGAAGCAGGAGATCATGGCGGAGGGTCCCCGGTGTAAGAGGAGAAAACAGGCCAATCCGAGGAGAAAGAACGTGCTGAGCTATGAAAACGTGGTGGATGCCGGTTCAGGGTCCGACGATGAGGACAGACTGCTGGGATCTGAGGGTGAAGGCAGTCCAGCAGGTGTCCCGAGTCTGGAGGCTTCACCCCGGGTAGCCCATGCCCTGCTCTCCTGCCGGGGTGACGAAGAAAATGAAAGCCAGGATGGGGCAGGAGCCCATGTTTGGCGCCACGGGGAGCTGAATGGTTCAGAAGAGAGAAAAGCTGAGTACAACTCCATGAGCCCTGACATCTCTCTTCATGGAATTGGAAATGGTACAGTTAAGGGGATTGATGCCTCTTCAGAGCTGGAAAGCTTCTTTGCCAAAAGGAAACTGGATGACGGTGAGGGACACGCAGCAAGCATTGCTGAGTACCTGCAGGACACCGTTATCATTTACCCAGAGGATCCAGAGGAAGGTACACGACTGGGCACACCAGAGGCCAACGGACAAGATGAAAATGAAAACGATCTGGCACTGAGGACGCCAGATGCCTTTGCCCAACTGTTGACCTGCCCCTACTGTGACCGGGGCTACAAGCGACTGACCTCCCTGAAGGAGCACATCAAGTACCGACATGAGAAAAACGATGAGAGCTTCCCCTGTCCCCTGTGCAGTGACACCTTCGCCTACCGCACCCAGCTAGAGCGCCATATGGCCACACATAAACCTGCCAGAGATCAGCCTCAACTGCTAAATGAAGGGGCTGGCAATCGCAAATTTAAATGCACAGAGTGCGGCAAAGCCTTTAAATACAAGCATCATTTGAAGGAGCACCTCCGGATTCACAGTGgtGAGAAGCCATATGAGTGCTCCAACTGCAAGAAGCGTTTCTCCCACTCTGGCTCCTACAGCTCCCACATAAGTAGCAAGAAGTGCATTGGCCTTATCTCCATTAATGGACGGGTGCGCCATGGAGTCAACAACAAGCCTGGCTCATCACCAAACTCTGCTGCATCCTCTCCTGGCAGTCCTGCCTTAGCTCAGCTCCGTCACAAACTGGAGAACGGCAGGTCCATGAGCCTCCAAGACCCATCCGCTCACACAGACATCAAGTCTGAACCCATGGACTTCAATGAGTACCGTCTCATGATTGCATCTCAACAAGAATATGGTGCGTCGGGAGCCTTTCTCAATGGAGGTGGCCGTGGAGGTAGTCCTCCGGGGATGCACAGCTCATCTCAGAACCCATTGCAACATCTGGGTATCGGGTCAGATTCTCATCCACTGGGCTATACAGGGTTCATCAACAACATGAGTGAGGTTCAGAAGGTGCTTCAGATTGTGGACAACACAGTTTGCAGGCAAAAAATGGATGGCAACCCTGAAGAGATCTCTAAGCTTCGAGCATACATGAAGGAATTAGGCTCCCAGATGGAGGAGCAGAATCGGGTACTGGCCTCACAGCAAAGCTTCCTTGGCGTTGGTCACAACAGTCCCACCAAGACCATCATTGACTACACACTGGAAAAAGTCAATGAAGCCAAAGCATGTCTCCAGAGCTTAACAGAAGATTCCAAGAGGCGGCTCATGGATATCAAGAAAGAAAGACCAAGCCACGCCATGGATCTTCTATCTGAAGACAAAGCACTGGAGAGGGATGCACAGTACGCACCTTTCTCTTGTCAGTATTGCAAAGAGACATTTTCTGGCCCTATTCCATTACATCAACACGAGCGCTATCTCTGCAAGATGAACGAGGAGATCAAGGCTGTCCTCAAACCTAATGATACTGTACCAACTGGTCGCAGGGGGCTTTTCGGCTCAGAGCAGCAGGCTGGTGTGATCTCCTCATCCCTCGAGAGGAATGCCACCAGCCCAGTCAACCCCTACAAGGATCACATGTCATTACTGAACGTCTACTTTTCCATGAACACTGAACCCAACTCAGAGGAACTGAGGAAGATCTCTATGGCAGTGGGTCTTCCTCAGGAGTTTGTGAAGGATGCATTTGTTCAATGGAAAGCCCAATCTCACCATAGCTTCTCTAGGAAAAGATCTCCTCCTCCTGAGCGAAGTGGAGAGACCAACCATGTCAGGGATTCAGCATTTGCCCGGTCACCGGTTTCTTTGGGGCAATATGGCGACTCAACAGCAGAGATCCAAGCCATCACCAATGGGGATTCAGGGCACAAGTTGTCCAGAACACATCAGATTACAGGCACCAGGCAGACCAATGAAAAGCCACTTGACTCTGTGGACCACTTGAGAGGGGAGACACCCTCACCTTTGAAcctctcatcatcatcatccaaaCACTCACATAGCAGTTCATACACGCCTAACAGCCTCACCTCTGAGGATGCCCACGGGGAACCACTAGACTTGTCTTTGCCAAAACAAGTTTCCAAGGCAGAACGGAGGGCCAAACCGAATggtttttctattgaacacactAGTAATTCCACTGCACGTGAACCAGGAACAGAGCCTTTAAATTTGGCCCACATCAAGAAGGAGTTCAATGGACCCAACAGTTTGGGCAATGAAAATCAGATGGATAAAAGCTCAAGTCCCATCTTTAGCATAAACCCCTTTGGTGGAGGCCACATGTACACCTCTCTTCCACCACATGGCGCATTCCCTCCACCCACTTTCATGTCAACGACTCAAGCCAGCATACCGGGTCTAAGGCCTTACCCAGGGCTGGATCCCATGAGTTTTCTACCACCTATGGCTTATACTTACGCAGCAGGAGCAGCCACCTTTGCTGAGATGCAGCAACGTCGGAAATACCAGCGGAAACAAGGCTTCCAGGGGGATCTACTGGACAGTGCTGGGGACTATCTGTCAGGGCTAGAGGACCTGACAGACAGCGAGTCGCTTCTCGCCCGGAAGAAGATTAAGAAGACTGAAAGTGGTATGTACGCGTGTGACTTGTGCGACAAAACATTCCAGAAGACCAGTTCCCTCCTAAGACACAAATATGAGCACACAGGAAAGCGGCCTCACCAGTGCCAGATTTGCAAGAAGGCCTTCAAACACAAGCACCACCTCATCGAGCACTCGCGCCTACACTCGGGCGAGAAACCTTACCAGTGCGACAAATGTGGCAAGCGCTTCTCCCACTCCGGCTCTTACTCGCAGCACATGAACCACCGATATTCCTACTGCAAGCGGGAAGCGGAGGAGCGTGAGGCGGCCAAGCAAGAAAACCACAACAATGGTGGACCCCTGGAGCCCACAGAGCTCCTGATGCGGCGGGCTTACCTGCAAGGCCTTGGGCCTCTGGGCTTTTCAGATCCAGAGGATCAGGCTGAGGACATCACACGAGAAAACACCATCTTAAGAGACGGCACTGAGAGCGGGGCAAGGGAGACGGAAGAGACGTATGCGGAAGTGACTGACAGACAAGAGACAGGTTTGATGGGGGAAGAGGAAATGGAGGGGCAGAGGTTTGACACTCGTAGCCCTGATGGGACAGCAAAAGATGAGAAAGAGAGTGAAGTGACTGGAGGGACAGAGGACGAAAGCTCGGAGGAGGGGAAAAGAAACCATGACGGCGAGAACGAGGATGCCGATTAA

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0048468 cell development biological_process
GO:0000027 ribosomal large subunit assembly biological_process
GO:0021545 cranial nerve development biological_process
GO:0000028 ribosomal small subunit assembly biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0008152 metabolic process biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043009 chordate embryonic development biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0048513 animal organ development biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0090596 sensory organ morphogenesis biological_process
GO:0030182 neuron differentiation biological_process
GO:0048812 neuron projection morphogenesis biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0006414 translational elongation biological_process
GO:0060429 epithelium development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0120039 plasma membrane bounded cell projection morphogenesis biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0048858 cell projection morphogenesis biological_process
GO:0048592 eye morphogenesis biological_process
GO:0048593 camera-type eye morphogenesis biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:0048869 cellular developmental process biological_process
GO:0045595 regulation of cell differentiation biological_process
GO:0032990 cell part morphogenesis biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042255 ribosome assembly biological_process
GO:0048880 sensory system development biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0021675 nerve development biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0050767 regulation of neurogenesis biological_process
GO:0021953 central nervous system neuron differentiation biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0061564 axon development biological_process
GO:0007389 pattern specification process biological_process
GO:0050793 regulation of developmental process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0007399 nervous system development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0032502 developmental process biological_process
GO:0060284 regulation of cell development biological_process
GO:0001654 eye development biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0007417 central nervous system development biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0007420 brain development biological_process
GO:0007423 sensory organ development biological_process
GO:0030900 forebrain development biological_process
GO:0022008 neurogenesis biological_process
GO:0030902 hindbrain development biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0048699 generation of neurons biological_process
GO:0060042 retina morphogenesis in camera-type eye biological_process
GO:0031175 neuron projection development biological_process
GO:0061351 neural precursor cell proliferation biological_process
GO:0021510 spinal cord development biological_process
GO:0060322 head development biological_process
GO:0021515 cell differentiation in spinal cord biological_process
GO:0009790 embryo development biological_process
GO:0021517 ventral spinal cord development biological_process
GO:0150063 visual system development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0051960 regulation of nervous system development biological_process
GO:0044391 ribosomal subunit cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0044464 obsolete cell part cellular_component
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005623 obsolete cell cellular_component
GO:0043226 organelle cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0019843 rRNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-070912-553 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within several processes, including chordate embryonic development; convergent extension; and negative regulation of fibroblast growth factor receptor signaling pathway. Is expressed in several structures, including head; nervous system; neural plate; neuroectoderm; and tail bud. Human ortholog(s) of this gene implicated in Hirschsprung's disease and Mowat-Wilson syndrome. Orthologous to human ZEB2 (zinc finger E-box binding homeobox 2).

Ensembl:

ensembl_id ENSDART00000188547

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075115 lncRNA upstream 27323 25567599 ~ 25749947 (+) False XLOC_037156
TCONS_00075116 lncRNA upstream 46947 25567600 ~ 25730323 (+) False XLOC_037156
TCONS_00075114 lncRNA upstream 67087 25567575 ~ 25710183 (+) False XLOC_037156
TCONS_00073147 lncRNA upstream 135116 25567575 ~ 25642154 (+) False XLOC_037156
TCONS_00075113 lncRNA upstream 178268 25565740 ~ 25599002 (+) False XLOC_037156
TCONS_00075117 lncRNA downstream 192522 26028731 ~ 26032058 (+) False XLOC_037159
TCONS_00074900 lncRNA downstream 192696 26028905 ~ 26032109 (+) False XLOC_037159
TCONS_00075118 lncRNA downstream 193341 26029550 ~ 26032058 (+) True XLOC_037159
TCONS_00073160 lncRNA downstream 250027 26086236 ~ 26096186 (+) True XLOC_037160
TCONS_00073162 lncRNA downstream 284672 26120881 ~ 26121858 (+) False XLOC_037161
TCONS_00073145 mRNA upstream 430687 25330905 ~ 25346583 (+) False XLOC_037155
TCONS_00073144 mRNA upstream 605858 25096636 ~ 25171412 (+) False XLOC_037154
TCONS_00073143 mRNA upstream 605858 25096636 ~ 25171412 (+) True XLOC_037154
TCONS_00073142 mRNA upstream 610168 25096500 ~ 25167102 (+) False XLOC_037154
TCONS_00073138 mRNA upstream 825608 24936496 ~ 24951662 (+) True XLOC_037150
TCONS_00073156 mRNA downstream 4511 25840720 ~ 25911967 (+) False XLOC_037157
TCONS_00073157 mRNA downstream 16843 25853052 ~ 25913984 (+) True XLOC_037157
TCONS_00073159 mRNA downstream 249926 26086135 ~ 26096626 (+) False XLOC_037160
TCONS_00073161 mRNA downstream 267605 26103814 ~ 26127305 (+) False XLOC_037161
TCONS_00073167 mRNA downstream 363465 26199674 ~ 26293601 (+) True XLOC_037163
TCONS_00073146 other upstream 439543 25330971 ~ 25337727 (+) True XLOC_037155
TCONS_00073141 other upstream 696965 25079209 ~ 25080305 (+) True XLOC_037153
TCONS_00073140 other upstream 703071 25073539 ~ 25074199 (+) True XLOC_037152
TCONS_00073139 other upstream 709540 25066661 ~ 25067730 (+) True XLOC_037151
TCONS_00073135 other upstream 1350030 24423792 ~ 24427240 (+) True XLOC_037148
TCONS_00073158 other downstream 20404 25856613 ~ 25856729 (+) True XLOC_037158
TCONS_00073164 other downstream 363415 26199624 ~ 26293589 (+) False XLOC_037163
TCONS_00073165 other downstream 363415 26199624 ~ 26411378 (+) False XLOC_037163
TCONS_00073166 other downstream 363450 26199659 ~ 26504452 (+) False XLOC_037163
TCONS_00073169 other downstream 858660 26694869 ~ 26697305 (+) True XLOC_037166

Expression Profile

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