RNA id: TCONS_00075118


Basic Information

Item Value
RNA id TCONS_00075118
length 558
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id XLOC_037159
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 26028731 ~ 26032109 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAAGTGATGAAATTAGAGCGCACAAGTATTTAATTGACACAGAGAGCGCCAGCCCGTGTTTTGAGTCTGCTTCATCCCTGCGCTCTGCTCCAGGTCATGGCTTTTAGAGATGGAGAGAGGGTGAGGAAAGAATGAAAAGTGAACCGAGAGAAAGGATCTGAAAGTGCAATTTCCTCGTGCACATGTGGGAACTCAATTCTGCTTGGCCGACTCTTCTTAAACCTGTACGTGATGAATGAGTGAAGTTATAAAGCTGAAGCAAACATGTTTTTGGATGTTAAAAGACTTTCTCCTATCCATGCTTAATGTGGAAAGACAACTGTGAGCAAGCAATTTGTTGGCCGATTTCCCTAGAGAGTGTAAATAGCGTCTGGCAGAGCTAGTGCAACAAGAATttcacaatttagcttatttttttgttacacatatttaaaaaatgatttaagattGATGATGTTAAATATAGGGCTTTTTCTATTGGTAATCATGCAAAAGCAATATATTAAAATTGTATGAACAAATGGCTGTAAAATCTGGAGCAATTgtaaagtttaaatt

Function

GO:

id name namespace
GO:0048729 tissue morphogenesis biological_process
GO:0048731 system development biological_process
GO:0016070 RNA metabolic process biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0048513 animal organ development biological_process
GO:1990399 epithelium regeneration biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0035295 tube development biological_process
GO:0009611 response to wounding biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0060429 epithelium development biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0048568 embryonic organ development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0048589 developmental growth biological_process
GO:0048596 embryonic camera-type eye morphogenesis biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0031076 embryonic camera-type eye development biological_process
GO:0040007 growth biological_process
GO:0070654 sensory epithelium regeneration biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0048048 embryonic eye morphogenesis biological_process
GO:0032502 developmental process biological_process
GO:0007417 central nervous system development biological_process
GO:0009790 embryo development biological_process
GO:0005730 nucleolus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0140110 transcription regulator activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00073149 lncRNA upstream 203338 25775816 ~ 25826212 (+) False XLOC_037156
TCONS_00075115 lncRNA upstream 279603 25567599 ~ 25749947 (+) False XLOC_037156
TCONS_00075116 lncRNA upstream 299227 25567600 ~ 25730323 (+) False XLOC_037156
TCONS_00075114 lncRNA upstream 319367 25567575 ~ 25710183 (+) False XLOC_037156
TCONS_00073147 lncRNA upstream 387396 25567575 ~ 25642154 (+) False XLOC_037156
TCONS_00073160 lncRNA downstream 54178 26086236 ~ 26096186 (+) True XLOC_037160
TCONS_00073162 lncRNA downstream 88823 26120881 ~ 26121858 (+) False XLOC_037161
TCONS_00073163 lncRNA downstream 89305 26121363 ~ 26124026 (+) True XLOC_037161
TCONS_00074901 lncRNA downstream 153030 26185088 ~ 26191424 (+) True XLOC_037162
TCONS_00074902 lncRNA downstream 539171 26571229 ~ 26574876 (+) True XLOC_037164
TCONS_00073157 mRNA upstream 115566 25853052 ~ 25913984 (+) True XLOC_037157
TCONS_00073156 mRNA upstream 117583 25840720 ~ 25911967 (+) False XLOC_037157
TCONS_00073155 mRNA upstream 193103 25832329 ~ 25836447 (+) True XLOC_037156
TCONS_00073154 mRNA upstream 193341 25777270 ~ 25836209 (+) False XLOC_037156
TCONS_00073153 mRNA upstream 201671 25776971 ~ 25827879 (+) False XLOC_037156
TCONS_00073159 mRNA downstream 54077 26086135 ~ 26096626 (+) False XLOC_037160
TCONS_00073161 mRNA downstream 71756 26103814 ~ 26127305 (+) False XLOC_037161
TCONS_00073167 mRNA downstream 167616 26199674 ~ 26293601 (+) True XLOC_037163
TCONS_00073173 mRNA downstream 1297582 27329640 ~ 27337185 (+) True XLOC_037171
TCONS_00073174 mRNA downstream 1307447 27339505 ~ 27344683 (+) True XLOC_037172
TCONS_00073158 other upstream 172821 25856613 ~ 25856729 (+) True XLOC_037158
TCONS_00073146 other upstream 691823 25330971 ~ 25337727 (+) True XLOC_037155
TCONS_00073141 other upstream 949245 25079209 ~ 25080305 (+) True XLOC_037153
TCONS_00073140 other upstream 955351 25073539 ~ 25074199 (+) True XLOC_037152
TCONS_00073139 other upstream 961820 25066661 ~ 25067730 (+) True XLOC_037151
TCONS_00073164 other downstream 167566 26199624 ~ 26293589 (+) False XLOC_037163
TCONS_00073165 other downstream 167566 26199624 ~ 26411378 (+) False XLOC_037163
TCONS_00073166 other downstream 167601 26199659 ~ 26504452 (+) False XLOC_037163
TCONS_00073169 other downstream 662811 26694869 ~ 26697305 (+) True XLOC_037166
TCONS_00073172 other downstream 1250264 27282322 ~ 27282436 (+) True XLOC_037168

Expression Profile

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