G1812882


Basic Information

Item Value
gene id G1812882
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 43097941 ~ 43098160 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2073961
ATGCTAACAGTTTTCCAAATACCACTGATTGCTTTCATCACAATGAAGGAAAGCAGACGCTTTTGCTGAGCTCCACTTCAACAAACAACACTCTCACAAAAACCTCCCAACCCACGTTTTGTTCCCAGACAAAACCTCCTTGACCGTCTAAACGCTCCCAGTGAAGAAACAGTTCTTTCAGATTTCTCCCCCTTTTCTTAAGTAAAATATAGAATACAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2073961 True 220 lncRNA 0.41 1 43097941 43098160

Neighbor

gene id symbol gene type direction distance location
LOC110501901 LOC106582440 coding upstream 59947 42884711 ~ 43039681 (+)
LOC110502157 LOC106582435 coding upstream 363379 42688215 ~ 42735867 (+)
LOC110502156 ahr2a coding upstream 412833 42615178 ~ 42685108 (+)
LOC110501894 glpc coding upstream 546971 42511973 ~ 42550970 (+)
LOC110501889 LOC106582433 coding upstream 708473 42256417 ~ 42389468 (+)
LOC110501905 LOC106582444 coding downstream 115680 43213840 ~ 43226393 (+)
LOC110501904 LOC106582430 coding downstream 132264 43230424 ~ 43232133 (+)
LOC110501906 LOC106582445 coding downstream 248643 43346803 ~ 43486763 (+)
LOC110501907 LOC106582447 coding downstream 403633 43501793 ~ 43549935 (+)
LOC110501909 LOC106582448 coding downstream 452312 43550472 ~ 43572947 (+)
G1812872 NA non-coding upstream 5234 43092501 ~ 43092707 (+)
G1812871 NA non-coding upstream 5653 43092078 ~ 43092288 (+)
G1812807 NA non-coding upstream 56037 43040357 ~ 43041904 (+)
G1812806 NA non-coding upstream 57675 43040061 ~ 43040266 (+)
G1812706 NA non-coding upstream 61722 43036005 ~ 43036219 (+)
G1812895 NA non-coding downstream 10356 43108516 ~ 43108780 (+)
G1812896 NA non-coding downstream 10640 43108800 ~ 43109115 (+)
G1812915 NA non-coding downstream 23846 43122006 ~ 43122234 (+)
G1812930 NA non-coding downstream 37177 43135337 ~ 43135553 (+)
G1813008 NA non-coding downstream 102887 43201047 ~ 43201301 (+)
G1812428 NA other upstream 373827 42723672 ~ 42724114 (+)
G1810740 NA other upstream 1631592 41464478 ~ 41466349 (+)
G1810553 NA other upstream 1905449 41189689 ~ 41192492 (+)
G1812953 NA other downstream 51602 43149762 ~ 43150384 (+)
G1813442 NA other downstream 1010084 44108244 ~ 44110867 (+)
LOC110502169 LOC106582455 other downstream 1219998 44148629 ~ 44324651 (+)
G1813588 ino80d other downstream 1264501 44362661 ~ 44371923 (+)
G1813665 LOC106582464 other downstream 1400297 44498457 ~ 44508051 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000048_01435860_01439297 SOX21 coding CI01000048 null 1435687 ~ 1440264 (-)