XLOC_037630 (bin1a)


Basic Information

Item Value
gene id XLOC_037630
gene name bin1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 7410798 ~ 7444753 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073891
CAAGGAGACAAGGAAGCTGAGGTGCCTCAGACATGGGACGATGATGGTACCCAGCCTGTGCGCTCGGGCTGGGAAGATGATGGTACTCAGGCTACCTGGGATGATGATGGTAGCCAGCCTGTGCGTGCCCCGGCCGCATACCCCACCTGggatgatgctgatgatgataAAGAAGATGATGGCTCTCAGCCTGTGCAGGCCAATGACAATGATCCTACCCAGGAGACCCAGGGGTGGGACGATGATGGGGCTCAGACTGCAGAAACAACAGCTGTTACAGAAGAGGCAGCAGCAGCTGAACCTGTAAGTGAGACTGTGCAGGAGAGCGCCGAGAGCCCAGAGAGCGTAGAGATGCCAGAATCCTTCCTGTTCAAAGTGAAAGCTATGCACGACTACAATGCCACCGACTCTGATGAGCTGGAGTTAAAGGCGGGGGACGTGGTGCTGGTAGTGAATTACGAAAATCCAGACGATCAgGATGACGGCTGGTTGATGGGAGTCAAAGAGGCTGATTGGATCCAGCAGAAAGATCTTGGGAAAAAAGGCGTGTTCCCTGAAAACTTCACCCAGAGGATGTGA
>TCONS_00073893
ATGGCTGAATTACCGATGGGGAAAGGGGTGTCCGCTGGAAAAATAGCAAGCAATGTACAGAAGAAAATTACTAGAGCACAGGAGAAGGTTATGCAAAAGCTTGGAAAGGCAGATGAGACTAAAGATCTGGCGTTTGAGGAGGGCGTGATCAACTTTAATAAACAGTTGGTGGAAGGTACCAAACTGCAGAAAGACCTTCGGGCCTATTTGACTGCTGTGAAAGCCATGCACGAGTCTTCTAGACGTCTGTACGAGTGCCTGGATGACATGTATGAGACAGAGTGGTACGGCAGAAAGAAAATGGACGCAGTTGTAGagGATTCAGACCTGCTTTGGACAGACTTCCATCAGAAACTCGTGGATCATGCGCTTATATCCATGGACACTTACCTGGGCCAGTTTCCAGACATCAAAGCTCGCATTGCGAAACGTGACAGAAAGCTAGTTGACTTTGACAGCGCACGGCACAActttgctgcagtaaacaaaggcAAGAAGAAAGAAGGGGTCAAGATCACCAAGCCAGCCTCTTTGCTGGAAAGGGCTGCCCCAAGCTGGGCTCAGGGGATCCTGTCCGCCCATAATGTGGCTCAAACCAGCCTATCTAGGAGTCAGgcAGAGGAGGAGCTGGAAAGGGCACAGAAAGTCTTTGAGGAAATTAACATAGATTTGCAGGAGGAACTGCCATCTCTGTGGAACAGTCGTGTTGGCTTTTATGTGAATACGTTCCAGAGTGTGGCAGGTCTGGAGGAAAAGTTTCACAGAGAAATGGGAAAAATTAATCAGAATCTTTACGATacactggacaaactggaaaaTCAAGATATGACCAGGAAATATTGTACTTCACACAAACTGTGTCCAAACTGGCCAGCCCGTTTGTATGGAAGCCCATTTGCGccactgaataataaaaaaagTGAAAGAACACAAGATGCCAATCACACTTTAAGTCCAGGAGGACCACCAGCCATTCCCAAATCGCCGTCTAAGGCTACCTGGGATGATGATGGTAGCCAGCCTGTGCGTGCCCCGGCCGCATACCCCACCTGggatgatgctgatgatgataAAGAAGATGATGGCTCTCAGCCTGTGCAGGCCAATGACAATGATCCTACCCAGGAGACCCAGGGGTGGGACGATGATGGGGCTCAGACTGCAGAAACAACAGCTGTTACAGAAGAGGCAGCAGCAGCTGAACCTGTAAGTGAGGTAAGAGAGAGaccaatgactgtaaaaaatatgACTGTGCAGGAGAGCGCCGAGAGCCCAGAGAGCGTAGAGATGCCAGAATCCTTCCTGTTCAAAGTGAAAGCTATGCACGACTACAATGCCACCGACTCTGATGAGCTGGAGTTAAAGGCGGGGGACGTGGTGCTGGTAGTGAATTACGAAAATCCAGACGATCAgGATGACGGCTGGTTGATGGGAGTCAAAGAGGCTGATTGGATCCAGCAGAAAGATCTTGGGAAAAAAGGCGTGTTCCCTGAAAACTTCACCCAGAGGATGTGA
>TCONS_00073892
ATGGCTGAATTACCGATGGGGAAAGGGGTGTCCGCTGGAAAAATAGCAAGCAATGTACAGAAGAAAATTACTAGAGCACAGGAGAAGGTTATGCAAAAGCTTGGAAAGGCAGATGAGACTAAAGATCTGGCGTTTGAGGAGGGCGTGATCAACTTTAATAAACAGTTGGTGGAAGGTACCAAACTGCAGAAAGACCTTCGGGCCTATTTGACTGCTGTGAAAGCCATGCACGAGTCTTCTAGACGTCTGTACGAGTGCCTGGATGACATGTATGAGACAGAGTGGTACGGCAGAAAGAAAATGGACGCAGTTGTAGagGATTCAGACCTGCTTTGGACAGACTTCCATCAGAAACTCGTGGATCATGCGCTTATATCCATGGACACTTACCTGGGCCAGTTTCCAGACATCAAAGCTCGCATTGCGAAACGTGACAGAAAGCTAGTTGACTTTGACAGCGCACGGCACAActttgctgcagtaaacaaaggcAAGAAGAAAGAAGGGGTCAAGATCACCAAGCCAGCCTCTTTGCTGGAAAGGGCTGCCCCAAGCTGGGCTCAGGGGATCCTGTCCGCCCATAATGTGGCTCAAACCAGCCTATCTAGGAGTCAGgcAGAGGAGGAGCTGGAAAGGGCACAGAAAGTCTTTGAGGAAATTAACATAGATTTGCAGGAGGAACTGCCATCTCTGTGGAACAGTCGTGTTGGCTTTTATGTGAATACGTTCCAGAGTGTGGCAGGTCTGGAGGAAAAGTTTCACAGAGAAATGGGAAAAATTAATCAGAATCTTTACGATacactggacaaactggaaaaTCAAGATATGACCAGGTGCAATACATGCTTTAGTGAAAGAACACAAGATGCCAATCACACTTTAAGTCCAGGAGGACCACCAGCCATTCCCAAATCGCCGTCTAAGGCCGCCACACCAAACATCAGTGTCACCTCACCAACAGAGcctTTTAGCTTGTCAACACACAAAGCTACCTGGGATGATGATGGTAGCCAGCCTGTGCGTGCCCCGGCCGCATACCCCACCTGggatgatgctgatgatgataAAGAAGATGATGGCTCTCAGCCTGTGCAGGCCAATGACAATGATCCTACCCAGGAGACCCAGGGGTGGGACGATGATGGGGCTCAGCAGACTGCAGAAACAACAGCTGTTACAGAAGAGGCAGCAGCAGCTGAACCTGTAAGTGAGTGGCTAGACTGCAGTTTGGTTAATGTTCCTAACAATTCAGTtaaaaatggaACTGTGCAGGAGAGCGCCGAGAGCCCAGAGAGCGTAGAGATGCCAGAATCCTTCCTGTTCAAAGTGAAAGCTATGCACGACTACAATGCCACCGACTCTGATGAGCTGGAGTTAAAGGCGGGGGACGTGGTGCTGGTAGTGAATTACGAAAATCCAGACGATCAgGATGACGGCTGGTTGATGGGAGTCAAAGAGGCTGATTGGATCCAGCAGAAAGATCTTGGGAAAAAAGGCGTGTTCCCTGAAAACTTCACCCAGAGGATGTGA
>TCONS_00073894
GTGTGCGCTTGTGCAGCTTCATTCTAGTCCAGGGGCGAGTGTTATTATAAGGCCTAAAATATCTAGCTACCTGCATTGAGGAAAATACAGCTCTGTTGAATTACATATTTAACACATGTTCATTTGACGCGGTATCCTGCAAGAACCACAATCCGGATAAAAAATGGCTGAATTACCGATGGGGAAAGGGGTGTCCGCTGGAAAAATAGCAAGCAATGTACAGAAGAAAATTACTAGAGCACAGGAGAAGGTTATGCAAAAGCTTGGAAAGGCAGATGAGACTAAAGATCTGGCGTTTGAGGAGGGCGTGATCAACTTTAATAAACAGTTGGTGGAAGGTACCAAACTGCAGAAAGACCTTCGGGCCTATTTGACTGCTGTGAAAGCCATGCACGAGTCTTCTAGACGTCTGTACGAGTGCCTGGATGACATGTATGAGACAGAGTGGTACGGCAGAAAGAAAATGGACGCAGTTGTAGagGATTCAGACCTGCTTTGGACAGACTTCCATCAGAAACTCGTGGATCATGCGCTTATATCCATGGACACTTACCTGGGCCAGTTTCCAGACATCAAAGCTCGCATTGCGAAACGTGACAGAAAGCTAGTTGACTTTGACAGCGCACGGCACAActttgctgcagtaaacaaaggcAAGAAGAAAGAAGGGGTCAAGATCACCAAGCCAGCCTCTTTGCTGGAAAGGGCTGCCCCAAGCTGGGCTCAGGGGATCCTGTCCGCCCATAATGTGGCTCAAACCAGCCTATCTAGGAGTCAGgcAGAGGAGGAGCTGGAAAGGGCACAGAAAGTCTTTGAGGAAATTAACATAGATTTGCAGGAGGAACTGCCATCTCTGTGGAACAGTCGTGTTGGCTTTTATGTGAATACGTTCCAGAGTGTGGCAGGTCTGGAGGAAAAGTTTCACAGAGAAATGGGAAAAATTAATCAGAATCTTTACGATacactggacaaactggaaaaTCAAGATATGACCAGCAAAACAGGAAGCCAAGGGGTGAGGACATCAACAGCCCAGAAGAGAACACAAGATGCCAATCACACTTTAAGTCCAGGAGGACCACCAGCCATTCCCAAATCGCCGTCTAAGCTAAGGCCTGCAGTTCCTCCTCCTCCCAAAGTAACTCCGTCAAAGGACCTGAAGCAGGAGAGCATCATCAACCTGTTTGAAGAGGCCGCCACACCAAACATCAGTGTCACCTCACCAACAGAGtATGATGCTCCAGCCACTGGTAATCTTCTGGATATGGATCTGGACTCACTTCAAGCTGCCACCACACCAGCTGCACAG

Function

symbol description
bin1a Predicted to enable phospholipid binding activity and tau protein binding activity. Predicted to act upstream of or within regulation of endocytosis. Predicted to be located in cytoplasm. Predicted to be active in plasma membrane and synaptic vesicle.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000042114

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073891 False 579 mRNA 0.54 5 7410798 7421135
TCONS_00073893 False 1515 mRNA 0.49 20 7410798 7444590
TCONS_00073892 False 1530 mRNA 0.49 21 7410798 7444590
TCONS_00073894 True 1309 mRNA 0.47 14 7423916 7444753

Neighbor

gene id symbol gene type direction distance location
XLOC_037629 slc23a3 coding downstream 16386 7394229 ~ 7394412 (-)
XLOC_037628 slc23a3 coding downstream 20410 7390207 ~ 7390388 (-)
XLOC_037627 slc23a3 coding downstream 32232 7371962 ~ 7378566 (-)
XLOC_037626 BX942813.1 coding downstream 51314 7357819 ~ 7359484 (-)
XLOC_037625 mitd1 coding downstream 123423 7275185 ~ 7287375 (-)
XLOC_037631 NA coding upstream 54507 7499260 ~ 7505531 (-)
XLOC_037632 desma coding upstream 71111 7515864 ~ 7539326 (-)
XLOC_037633 dnajb2 coding upstream 176869 7621622 ~ 7655301 (-)
XLOC_037634 tuba8l3 coding upstream 217885 7662638 ~ 7673856 (-)
XLOC_037635 si:ch73-199e17.1 coding upstream 233383 7678136 ~ 7684002 (-)
XLOC_037618 BX842683.1 non-coding downstream 692997 6717677 ~ 6717801 (-)
XLOC_037614 NA non-coding downstream 862002 6531549 ~ 6548796 (-)
XLOC_037613 FQ377643.1 non-coding downstream 1001527 6409157 ~ 6409271 (-)
XLOC_037602 NA non-coding downstream 2543359 4866100 ~ 4867439 (-)
XLOC_037636 NA non-coding upstream 497016 7941769 ~ 7942597 (-)
XLOC_037637 NA non-coding upstream 715588 8160341 ~ 8163995 (-)
XLOC_037638 NA non-coding upstream 839402 8284155 ~ 8286208 (-)
XLOC_037644 BX537313.1 non-coding upstream 1564370 9009123 ~ 9024269 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000037_01788114_01805399 BIN1 coding CI01000037 null 1788114 ~ 1805405 (+)