XLOC_037652 (si:ch211-214p13.9)


Basic Information

Item Value
gene id XLOC_037652
gene name si:ch211-214p13.9
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 9411009 ~ 9415000 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073927
GataaaacatctttaaatatcAAACTCATTGCCATACCATTGGGTTTAGTCTGTTTTATTCTTGTGTCTCTGGCCATGGTTTACGTGCTGCTCAGAAAGTTTAACAGCCTAAGCACGTTGAAGATGCTTTGCTGCAAATCCAAAATCTCACCACCAGCTGACGACAAACCAGCCCAGCCTGCTGACGTGGAAGAAGTTGAACCGTATGCAAGTTACATACAGCGAGTGAATTCCATCTACAACTCCTCAGCTGAACTCTTCAACGCCTGAGACACAAACATGCATTTGCTTTGCATCATGAAACAGGAAATCAGAAACAGCACTGAGAATTAAAAAGGCAAACGAATGTCTGTGGTCAAAATTACACATGAAAGGCAATACTAGTGGAAAAACAGTCATTTCGCGAGAGCATCCCCCAAGAAAACAGCGTCTGACTGAGGAACCATAGCAAAATGAGTCAAACCATGAAAAGCAATGACAAAGGAACGTCTGTCCTCGTAGATGATGAAGAATGCGACGCCTGCATCAGAGATATCACTAATATGTAAATTTATTGAGAGCAAGACTGGGTAGATATTAATCCGTTTTTCCACGTTTGTACAGATATCTGTCCTTTCAACGGTAAAATCTACCCATTGACAATACTACAGCTTTTACCTTGTAAAGTGGGGGATTTACGTGTTGCACAGAattaaaatgatgtaaataaatatctatatTACTTTA

Function

symbol description
si:ch211-214p13.9 Predicted to be involved in B cell differentiation and B cell receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be part of B cell receptor complex. Predicted to be active in external side of plasma membrane. Orthologous to human CD200R1 (CD200 receptor 1) and CD200R1L (CD200 receptor 1 like).

GO:

id name namespace
GO:0030183 B cell differentiation biological_process
GO:0050853 B cell receptor signaling pathway biological_process
GO:0019815 B cell receptor complex cellular_component
GO:0009897 external side of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-213 Predicted to be involved in B cell differentiation and B cell receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be part of B cell receptor complex. Predicted to be active in external side of plasma membrane. Orthologous to human CD200R1 (CD200 receptor 1) and CD200R1L (CD200 receptor 1 like).

Ensembl:

ensembl_id ENSDARG00000091411

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073927 True 726 mRNA 0.40 3 9411009 9415000

Neighbor

gene id symbol gene type direction distance location
XLOC_037651 AL954142.4 coding downstream 40143 9355372 ~ 9370866 (-)
XLOC_037650 zgc:113337 coding downstream 62951 9322424 ~ 9348058 (-)
XLOC_037649 NA coding downstream 121939 9286419 ~ 9289070 (-)
XLOC_037648 si:ch211-214p13.3 coding downstream 128490 9251466 ~ 9282519 (-)
XLOC_037647 u2af1 coding downstream 168232 9230446 ~ 9242777 (-)
XLOC_037653 si:ch211-214p13.9 coding upstream 660 9415660 ~ 9419704 (-)
XLOC_037654 gsk3ba coding upstream 162743 9577743 ~ 9671244 (-)
XLOC_037655 gpr156 coding upstream 260926 9675926 ~ 9705512 (-)
XLOC_037656 lrrc58b coding upstream 304225 9719225 ~ 9732212 (-)
XLOC_037657 fstl1b coding upstream 320493 9735493 ~ 9842149 (-)
XLOC_037645 NA non-coding downstream 360494 9026383 ~ 9050515 (-)
XLOC_037644 BX537313.1 non-coding downstream 386740 9009123 ~ 9024269 (-)
XLOC_037638 NA non-coding downstream 1124801 8284155 ~ 8286208 (-)
XLOC_037663 NA non-coding upstream 953380 10368380 ~ 10370625 (-)
XLOC_037667 BX000444.1 non-coding upstream 1430918 10845918 ~ 10846549 (-)
XLOC_037671 NA non-coding upstream 2156312 11571312 ~ 11572354 (-)
XLOC_037673 NA non-coding upstream 2180987 11595987 ~ 11655031 (-)
XLOC_037675 NA non-coding upstream 2407379 11822379 ~ 11855305 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000037_04221676_04227105 NA coding CI01000037 null 4221300 ~ 4227105 (-)