XLOC_037656 (lrrc58b)


Basic Information

Item Value
gene id XLOC_037656
gene name lrrc58b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 9719225 ~ 9732212 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073933
AGTCTACGCTGAATAGAGCGTCTTTGACAATAACTGTAAGCGTGAACGCAGCCATTAGGCTGGATATCTTAGGTTACATTACACAAGGTTACATTACACATGGATGATCGCAGTGCCTGGATGTAGATGTAAACTCGCTCGAAGTGTTCGGAAAGCAGCTTGAACGAGACGAAGAGCAACTCTTTTCATTTATCGACGAATAAAATGGAGGGTTTTGAAGGAGCCAGCAGCAGCGAGAGCGTTTTAGATCTGTCCCGTTTGAATCTGAGCAACTTAAGTTTGGACTCGGTTAGCGAGAAACGACGGAAAGACACGAAACAGCTGTATCTGTGTTACAACCGAATGACGTTTCTGGCCGAATCCATCAGCTTGTTCTCAAACCTGGAGTTTCTCGACATCAGTAACAACACGCTGTCTGTCATCTGCGAGGACATTACCCGACTGACCAAGCTCAAAACACTCATAGCCAAGAATAATCGTTTAAATGAGTTCTCTCTGCCCAAACATTTCGGCTCTATGCAGCTGGAAGTGTTGAATTTTAGTGGGAACAGGTTTGAGGAGATGCCGACCCAGTGTTTGCAGCTGCTGCGGCTCCAGTCTCTGTCTCTTGGAGGAAACAGACTGAAGAGCATCCCAGCAGAGATCGAGAGTCTGACCAGGTTAGAGCTGTTGTATTTGGGTGGTAACCAGATCTCCACCATCCCTGCTGAACTAGCCAACTTGCCCGGCCTTAGTTACTTGGTTCTGTGTGATAACCGCATCCAGAGTGTCCCACCTCAACTAAACCGGCTCTATTCCCTGCGTTCTCTTAGTTTGCACAATAACCTGCTGACATATCTTCCGAGAGAGATCCTAAGTCTGGTTCACCTTCAGGAGCTCAGTCTTCGAGGTAATCCTTTGGTCGTACGCTTCGTCAAGGACATGACTTACGATCCCCCATCACTTCTGGAGCTGTCTGGCCGCACCATCAAAAGCAAGAACCTGCTGTACTCTCATAAAGACCTTCCAAGCCATCTAGTCACCTACCTAGACACAGCCAGCAAGTGTCCCAACCCCAAGTGTGCAGGTGTTTACTTCGATTCATGTGTTCGTCACATCAAGTTTGTGGATTTCTGTGGGAAGTATCGCCTTCCCCTGATGCACTACCTGTGCTCCCCAGAATGCACCTCTCCCTGCAGCTCCAACCCTCAAAGCGACGCCGACTCAGACGATGACCACAGCGTGCCCGTTGATCGCCTTCAAAGAGTCCTGCTGGGATAACCTTGCTCACCCCGCACATGCCGCTTTCTTCCTCACTCCCTCTCTCACAGTGTTATCAGCAAGAACATTGAACTTTACCAGCCAGCTGGCTTGAAAAACCTCTCAGCTGAAGCCAAATCTTATTGCCAAGTGATTGAGCAAGTGGAATCCAGCAGCATTCTGGGAAAGCATATCTTCAGATAGTTTCCCTCACAAAGAAAGGCTTTGCCTTCATCAAAAACACTGGTGGTTCAGAatagttgtttttaaaatagttatATTAACTAAGTTGCCTTGGTCATCAATCTGTTTAGCTCTTGCACTTTCGAAATACTTAGAGGACTCACTTTAGGTACATGCCTATATTCTGATCGGCAGTAGATGGCTATGTCTCTCACAGGAGAACGCTAATTCAAAATTTCCACATTACGCACAAAGATTTACTGTGAAT

Function

symbol description
lrrc58b Orthologous to human LRRC58 (leucine rich repeat containing 58).

GO:

id name namespace
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050309-29 Orthologous to human LRRC58 (leucine rich repeat containing 58).

Ensembl:

ensembl_id ENSDARG00000063509

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073933 True 1690 mRNA 0.47 4 9719225 9732212

Neighbor

gene id symbol gene type direction distance location
XLOC_037655 gpr156 coding downstream 13713 9675926 ~ 9705512 (-)
XLOC_037654 gsk3ba coding downstream 47981 9577743 ~ 9671244 (-)
XLOC_037653 si:ch211-214p13.9 coding downstream 299521 9415660 ~ 9419704 (-)
XLOC_037652 si:ch211-214p13.9 coding downstream 304225 9411009 ~ 9415000 (-)
XLOC_037651 AL954142.4 coding downstream 348359 9355372 ~ 9370866 (-)
XLOC_037657 fstl1b coding upstream 3281 9735493 ~ 9842149 (-)
XLOC_037658 prmt2 coding upstream 220851 9953063 ~ 9960940 (-)
XLOC_037659 ugt1a1 coding upstream 237775 9969987 ~ 10003782 (-)
XLOC_037660 spopla coding upstream 318678 10050890 ~ 10068105 (-)
XLOC_037661 hnmt coding upstream 405984 10138196 ~ 10145880 (-)
XLOC_037649 NA non-coding downstream 430155 9286419 ~ 9289070 (-)
XLOC_037645 NA non-coding downstream 668710 9026383 ~ 9050515 (-)
XLOC_037644 BX537313.1 non-coding downstream 694956 9009123 ~ 9024269 (-)
XLOC_037638 NA non-coding downstream 1433017 8284155 ~ 8286208 (-)
XLOC_037663 NA non-coding upstream 636168 10368380 ~ 10370625 (-)
XLOC_037667 BX000444.1 non-coding upstream 1113706 10845918 ~ 10846549 (-)
XLOC_037671 NA non-coding upstream 1839100 11571312 ~ 11572354 (-)
XLOC_037673 NA non-coding upstream 1863775 11595987 ~ 11655031 (-)
XLOC_037675 NA non-coding upstream 2090167 11822379 ~ 11855305 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000037_04422746_04433245 LRRC58B, LRRC58 coding CI01000037 null 4422319 ~ 4433516 (-)
bowfin (Amia calva) AMCG00014725 lrrc58,LOC106574305 coding CM030128.1 CM030128.1 28767435 ~ 28779290 (+)